Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacacaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAGAATGTCCAATGATGACAAGCAACAATGTTGTAC

Basic information

species Glycine max
transcript GLYMA19G27380.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193314652|gb|FK278338.1|FK278338
EST:     TGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: TGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|298168584|gb|HO009514.1|HO009514
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTG
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTG
EST: gi|213596228|gb|DB981816.1|DB981816
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|192295707|gb|FG990561.1|FG990561
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATCCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|213597197|gb|DB981589.1|DB981589
EST:     CTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTAC-TCGACGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: CTGGAGCCCAATGGGGAATATATGATGCATTCAAAGT-CTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|22927800|gb|BU544939.1|BU544939
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|58024028|gb|CX710769.1|CX710769
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|207761334|gb|GD733719.1|GD733719
EST:     GAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: GAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|9901819|gb|BE610787.1|BE610787
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCTTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
EST: gi|254314924|gb|GR829917.1|GR829917
EST:     ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATT                         GCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA
genomic: ACTGGAGCCCAATGGGGAATATATGATGCATTCAAAGTCTTCGTCGGATTgtaagtttac ... cccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttcattccttcatcatggacgtgctaatgagattttttcccccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAGAATGTCCAATGATGACAAGCAACAATGTTGTAC
                          tgctaat  putative branch site (score: 2)
                                     ttttttcccccttccc  putative PPT
                             taatgagatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttacacaattgctagtcaatgatagggttccattctttcattccttcatcatggacgtgctaatgagattttttcccccttcccagGCCAACCACTGGTGGTCCTGCTCCTGCAGCTGCTCCAGCTCCTGGTTCTGAGCTAGCAAAGGCATAGAATGTCCAATGATGACAAGCAACAATGTTGTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA