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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtggatgttgttatgactggtctagttttctaatatagtatattctttttctttgctgacctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG

Basic information

species Glycine max
transcript GLYMA19G27360.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 3'ss of exon 5
---------------------------------------gtttgtggatgttgttatgactggtctagttttctaa---tatagtatattctttttctttgctgacctacttgactattt-----------cagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                                         ||     | || ||   |  |    ||   |   |   ||| || |  ||||||  |   |    ||| ||   |  ||            ||||||||||| ||||||||||||||  |||||||||| || || || || || |||||| || ||   || ||||||||| ||||| | ||||| || || 
gtagattgcatgccactgagtttttggctttaagccaattctttcttgttttatttcaaaggactcagaaatgcgagggtatggtttcatcttttgttagtcaactctaattagtttgttttccttctgtatagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCACATCAGAACATCTAGTGACACTCCTTGCAGTTGTTCCTAAGTACTCTCAA

upper sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G177912_T02 (Zea mays), 3'ss of exon 5
-------------------gtttgtggatgttgttatgactggtctagttttctaatatagtatattctttttctttgctgacctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                    |     |    |   | | | |   ||| |        |  | |  |    |  || | |    |  |   || |  |||||||||||| ||||||||||||||  |||||||||| || || || ||    |||||  || ||   || || ||||| |||||| | ||||| || || 
tcaattcctttgttgttttatgcaaagcaagtaggaaggcagagttaggtcaactgcttcttgttatgcactgattagtttgtgttttcttctgtgacagCTTAGCAGTTCGTGATCTTTCCAATCTGGTAAAACCAGAGGATATGGTCTGCTCAGAGCATCTAGTAACACTTCTTGCTATTGTTCCAAAGTACTCCCAA

upper sequence: GLYMA19G27360.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 3'ss of exon 5
----------gtttgtggatgttgttatgactggtctagttttctaatatagtatattctttttctttgctgacctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
          |||      ||||  || |||        ||||   || || | |  | | |||  |    |||||  |||  |  |||||| |||| || ||||||||||||||| | ||||| || || |||||| |  | |||||| |||||   || || |||||||||||| |||||||||| |||
gtataccttggttgaaatctgtttgtaggacaaacaagatttt---atttactgtgatttcttttctgatcgacctctttgcttgcttcagCCTAGCTGTTCGTGATCTTTCCAACCTAGTAAAGCCAGAGGACATTATTGCCTCAGAACATTTAGTGACACTTCTTGCAATTGTTCCCAAGTATTCTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846063|gb|BF069052.1|BF069052
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
EST: gi|192300408|gb|FG988825.1|FG988825
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
EST: gi|7478459|gb|AW666273.1|AW666273
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
EST: gi|7693148|gb|AW761245.1|AW761245
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
EST: gi|6502104|gb|AW203477.1|AW203477
EST:     CCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: CCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
EST: gi|298194875|gb|HO043347.1|HO043347
EST:     AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAG                         CTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC
genomic: AACAATATCCGCAGTCAGCTTAATGCTATCAACCGAAAGCAAACAGGAAGgtttgtggat ... actatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttctaatatagtatattctttttctttgctgacctacttgactatttcagCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCTGAAGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAG
                                              ctatttc  CT-rich tract
     ttctaatatagtatat  TA-rich tract