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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaattaagagaaattaaattaaattaaaatgcacgttacttactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG

Basic information

species Glycine max
transcript GLYMA19G27130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g28320.3 (Oryza sativa), 3'ss of exon 4
------------------------gttaaattaagagaaattaaattaaattaaaatgcacgttact----tactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG-----------------------------------------------
                          | | |||       || | | ||  |  |   | | | ||      |||      |||| ||   |   | |||||||||||||||||||||||| |||||||||||  |||| || ||||| ||||                                               
tgttagctcctattcaagtttgtgcatcatttactccttgttcattgaacctccacatcgcttcaccgtgccactcattcgaagcattacttgtgttcagGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTGGTA

upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g28320.1 (Oryza sativa), 3'ss of exon 4
------------------------gttaaattaagagaaattaaattaaattaaaatgcacgttact----tactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG--------------------------------------------
                          | | |||       || | | ||  |  |   | | | ||      |||      |||| ||   |   | |||||||||||||||||||||||| |||||||||||  |||| || ||||| ||||                                            
tgttagctcctattcaagtttgtgcatcatttactccttgttcattgaacctccacatcgcttcaccgtgccactcattcgaagcattacttgtgttcagGGAGCTTGGCATTGGAATTGTTCCATATAGCCCAATTGGCCGTGGCTTCTTTGCTGGCAGGGCTGCTGTACAGAGCATACCATCTGAGAGTTGGCTG

upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM5G813143_T02 (Zea mays), 3'ss of exon 4
--------------------------------gttaaattaagagaaattaaattaaattaaaatgcacgttacttactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG--------------------------------------------
                                  | |  |  |     || ||      ||  |||||  |  ||   | |  ||||   ||  |||    |||||||||||| |||||||| || ||||||||||| ||||| || ||||| ||||                                            
ttgcaagttctaattaacttatgcttcatttttcttatctttggttcgttgaacatcgatatcatgcatttatctgtttgtcataaatgcttgcatt----cagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTTGCTGGCAGGGCAGCTGTAGAACGTGTTCCATCAGAAAGTCTATTG

upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G024315_T01 (Zea mays), 3'ss of exon 4
---------------------gttaaattaagagaaattaaattaaattaaaatgcacgttacttac-tttggtaaagctttttat----tga--tacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG--------------------------------------------
                     ||    |||  |  |  |||   ||   |   | |  | || |  | | |  |||   | |||||    ||   | ||| ||  | |||||||||||||||||||| || |||||||| || || |||||||                                            
gaacaaggtcttaatacatatgtattgttacaaatacgtaaccaaacaaagcctaccggatattatcatgtattaagattctttatgctgtggacttcagAGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG

upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gttaaattaagagaaattaaattaaattaaa--atgcacgttacttactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG--------------------------------------
                           ||     ||  |     |   |     | ||  ||  |  | || | || |  | |   | ||||   || ||||||||||||||||||||| || |||||  | ||||||||||| || |||||||                                      
aaggattatatgcttgatacctttcttgtatggctacaactctctctctctctcttaattataaatatgacatgctgttttcat-ttatttaaatatgcagGGAGCTTGGCATTGGAATAGTTCCATACTGTCCTCTTGGTCGTGGATTTTTTGGTGGTAGGGGAGTTGTGGAAAGTTTGCCTGCATACTTG

upper sequence: GLYMA19G27130.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S158_112V6.2 (Physcomitrella patens), 3'ss of exon 5
----------gttaaattaagagaaattaaattaaatt---aaaatgcacgtta-----------cttact---ttggtaa-agctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG-----------------------------------------------
            | || | | |   | || || ||||    | | |||  ||||            | |||   | | ||| |       | |  | |||||||||||| |||||||| || || |||||||||||||| ||||| || ||                                                 
accgagtaataatgaaatgacaaggactacatcaaatcttcacactgctagttaaagtctacagattcactgagtggataataaaaccccacttctgcagGGAGCTTGGAATTGGAATAGTGCCCTATAGCCCTCTTGGGCGAGGATTCTTCTCTGGGAAAGCCGTCGTTGAGAAACTGGAAGAGCAAGACTATCGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattaaattaaaatgcacgttacttactttggtaaagctttttattgatacagGGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTG
                                       ctttttatt  CT-rich tract
     taaattaaaatgca  TA-rich tract