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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC

Basic information

species Glycine max
transcript GLYMA19G25870.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574688|gb|CX547663.1|CX547663
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7285096|gb|AW597583.1|AW597583
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|6726683|gb|AW311047.1|AW311047
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|23734098|gb|BU765269.1|BU765269
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|14205633|gb|BG839311.1|BG839311
EST:     TGCATCATTYTGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCYGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|213588131|gb|DB979209.1|DB979209
EST:     GCATCATTTA-GACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: GCATCA-TTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|16345270|gb|BI970865.1|BI970865
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|298165387|gb|HO011436.1|HO011436
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|11275143|gb|BF325466.1|BF325466
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|21678397|gb|BQ630748.1|BQ630748
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|208279500|gb|GE080875.1|GE080875
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGG
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGG
EST: gi|254340597|gb|GR850899.1|GR850899
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|31308502|gb|CD393705.1|CD393705
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|15286212|gb|BI470103.1|BI470103
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|10237029|gb|BE805917.1|BE805917
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|6482567|gb|AW201818.1|AW201818
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
EST: gi|15200000|gb|BI424118.1|BI424118
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|16996811|gb|BM086183.1|BM086183
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254324154|gb|GR836279.1|GR836279
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|208271560|gb|GE071828.1|GE071828
EST:     CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|15663461|gb|BI700832.1|BI700832
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7233125|gb|AW568475.1|AW568475
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192334782|gb|FK025273.1|FK025273
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254339779|gb|GR857904.1|GR857904
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7234612|gb|AW569948.1|AW569948
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254335019|gb|GR844804.1|GR844804
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|8283592|gb|BE021151.1|BE021151
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCA
EST: gi|192304166|gb|FG993492.1|FG993492
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|4289775|gb|AI437974.1|AI437974
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7693250|gb|AW761345.1|AW761345
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|15337153|gb|BI497809.1|BI497809
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|19935119|gb|BQ080149.1|BQ080149
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|10237175|gb|BE806063.1|BE806063
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|16105386|gb|BI893126.1|BI893126
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|58019845|gb|CX706587.1|CX706587
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192317683|gb|FK009023.1|FK009023
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACCCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192299947|gb|FG991807.1|FG991807
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192316546|gb|FK009315.1|FK009315
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC
             cattgat  putative branch site (score: 4)
                           aatttgttattgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC

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