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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttatttcctattattgttattcttgttgtatttctatgtgctgcttaaatgtttgatgggatacatgtattttattcagATCACCTCCTGTGGCATTGCAGCCTTCATTGGGTCGTTACTTTGCGCGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACGAACACGGGG

Basic information

species Glycine max
transcript GLYMA19G24220.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24220.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G27325.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtttatttcctattattgttattcttgttgtatttctatgtgctgcttaaatgtttgatgggatacatgtattttattcagATCACCTCCTGTGGCATTGCAGCCTTCATTGGGTCGTTACTTTGCGCGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACGAACACGGGG
||| ||||  | |  | |       || |  | |     | |  ||  | ||   | ||| |||   ||  |  |||| || ||||||||||||| ||||||||||||| || ||||| | ||||||||| |  || |||  |||||||| | |||| ||| | ||||||||  |      ||| 
gtaagttttctccaaacttaacaagttttactcgccaaacaacatg--gtttgggt-ttttatg---tatcta-atttcatccagATCACCTCCTCTGGCATTGCAGCCATCCTTGGGGCATTACTTTGCTCAAGTGAATCGAGAATGGAAAAAAGGTTATGAAGTTCAAACATCCCCTGGGGGA

upper sequence: GLYMA19G24220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0047g01150.t01 (Vitis vinifera), 3'ss of exon 4
-----gtatgtttatttcctattattgttattcttgtt----gtatttctatgtgctgcttaaatgtttgatgggatacatgtattttattcagATCACCTCCTGTGGCATTGCAGCCTTCATTGGGTCGTTACTTTGCGCGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACGAACACGGGG
      ||| |   ||    |||    | | | | |||    | | |  ||||   || ||  || ||| ||| |||     | |||| | ||| |||||||| |||||||||||||| || ||||||| ||||||||| | |||||||   ||||||| | |||| ||| |||||||| || |   || ||| 
gtgagatatatggcttcttgattgacttcactgtggtttccagaaatattatggattggtt--attttttatgagatttccctgttttttccagGTCACCTCCAGTGGCATTGCAGCCATCCTTGGGTCATTACTTTGCACATGTAAATCAGGAATGGAGAAAAGGTTATGAGGTTCAATCCTCTCGCATGGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtatttctatgtgctgcttaaatgtttgatgggatacatgtattttattcagATCACCTCCTGTGGCATTGCAGCCTTCATTGGGTCGTTACTTTGCGCGTGTAAATTCAGAATGGATAGAAGGATATAAGGTTCAAACCACGAACACGGGG
                          gtttgat  putative branch site (score: 5)
                                             ttttattc  putative PPT
                                    atacatgtattttatt  TA-rich tract