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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcatctcctcacctctgctatatttcttgtcatttgattatatatttaacattaacttattttaaatcccatctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTCTG

Basic information

species Glycine max
transcript GLYMA19G23630.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G23630.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 3'ss of exon 6
gtttgtcatctcctcacctctgctatatttcttgtcatttga---ttatatattta-----acattaacttattttaaatcc---catctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTCTG
|| |||||| |  ||  ||     ||   |  || ||| |||   ||||||| | |       || | | | | | || ||      |  |||||||||| ||||| ||||||||||| |||||||||||  | ||||||||| ||
gtgtgtcatttgttccactaccaaattgatactgccatctgaaatttatatactcacatgtgtatgaccatgtatgaactcaatgtcttcttccagATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtcatttgattatatatttaacattaacttattttaaatcccatctttccagATTCATGGGTCAACTTCTATGGGAATATAGGAAAAGTGTTGCTATCTCTG
                        cattaac  putative branch site (score: 2)
                                         tcccatctttcc  putative PPT
      atttgattatatattt  TA-rich tract