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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaactctttctcatccaaatcaagtaatgcaaccaatgtacatgttttttacatgttgttatgtcacttctaatggatttcctatggttatgtgtattgatatatcctctctcttttttttctttttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAGGATTTTTTGGAGGGTTTGCTTTTGCTCCAACAACATACTTT

Basic information

species Glycine max
transcript GLYMA19G22590.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022530|gb|BM093564.1|BM093564
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254333452|gb|GR848370.1|GR848370
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254328519|gb|GR835484.1|GR835484
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254331012|gb|GR842277.1|GR842277
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254342920|gb|GR859082.1|GR859082
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254333453|gb|GR848371.1|GR848371
EST:     TTTCGAACCAAGCAG-ATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|23064051|gb|BU578824.1|BU578824
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|51343346|gb|CO984079.1|CO984079
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254335316|gb|GR846813.1|GR846813
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254344615|gb|GR855486.1|GR855486
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCC-ATTTTTCGAT
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGAT
EST: gi|254328520|gb|GR835485.1|GR835485
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
EST: gi|254340219|gb|GR858344.1|GR858344
EST:     TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGG                         CATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG
genomic: TTTCGAACCAAGCAGAATGCTTCGTTTTGTTGTACGTAATGTATATGTGGgtaagtaact ... tttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctatggttatgtgtattgatatatcctctctcttttttttctttttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAGGATTTTTTGGAGGGTTTGCTTTTGCTCCAACAACATACTTT
               tattgat  putative branch site (score: 3)
               tattgatatatcctct  CT-rich tract
                              tctcttttttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtaactctttctcatccaaatcaagtaatgcaaccaatgtacatgttttttacatgttgttatgtcacttctaatggatttcctatggttatgtgtattgatatatcctctctcttttttttctttttttttcagCATTCACTATGTTCATTGCTATTACCTTCCCATTTTTCGATGGTCTCCTAGGATTTTTTGGAGGGTTTGCTTTTGCTCCAACAACATACTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG