1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttttgttttattatttcacaatccattatcaagggtccttcttttatacttaaattattttgtgtataacaaacaaattgttcatttttctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTTTGAATCACTTGTTGGACCCATAGCATGCGACAAAGGTGAAACATTTTTT
species | Glycine max |
transcript | GLYMA19G22370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGGTGAGAAACCAAAACCATG CCCACGGACCAAAGCGTACGATGATGTTTATAA-TTTGGATTTCATATTGTEST: gi|57575489|gb|CX548464.1|CX548464
genomic: GCAAAGGGTGAGAAACCAAAACCATGgtatgctacc ... tctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGA-TTCATATTGT
EST: GCAAAGGGTGAGAAACCAAAACCATG CCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTTEST: gi|57575664|gb|CX548639.1|CX548639
genomic: GCAAAGGGTGAGAAACCAAAACCATGgtatgctacc ... tctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTT
EST: GCAAAGGGTGAGAAACCAAAACCATG CCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTT
genomic: GCAAAGGGTGAGAAACCAAAACCATGgtatgctacc ... tctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTT
ttatacttaaattattttgtgtataacaaacaaattgttcatttttctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTTTGAATCACTTGTTGGACCCATAGCATGCGACAAAGGTGAAACATTTTTT
gtataac putative branch site (score: 3)
ttgttcatttttctct putative PPT
ttaaattattttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttgttttattatttcacaatccattatcaagggtccttcttttatacttaaattattttgtgtataacaaacaaattgttcatttttctcttgtagCCCACGGACCAAAGCGGACGATGATGTTTATAATTTTGGATTCATATTGTTTGAATCACTTGTTGGACCCATAGCATGCGACAAAGGTGAAACATTTTTT
- - - - - - - - - - caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa