Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT

Basic information

species Glycine max
transcript GLYMA19G06730.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g27940.1 (Oryza sativa), 3'ss of exon 5
------gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaa-gtttttccttttgtatcaattta------agGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
          || |||   |  |        |    ||||   ||||  |  ||| || |   | |||| |||      |    |||||| || ||       || | ||| ||||||| ||||||||||||||||| ||||||||||| || || ||       || ||||||| |||   ||| || || || || || || |
taccttagctgtatttcaaacataatcacgggcgctaatgattttta--tgctgtctcgc---tgaattcaaacaacgctgaccttgtatgaacttgtgctgcagATCTTCCTGGACCCAAAGGAGCGCAACAACACCGAGTACAAGCTCGACACTTTCAGCTCTGTCTACAGGAGGCTCTGTGGGAAGGACGTCGTGTTCGACT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g18580.1 (Oryza sativa), 3'ss of exon 4
--------gtgagtgt-ttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
         || |  |  ||| |   ||    || |  |   | | |   |||| ||||| | |  | | | |  |    |   | |||      ||| || ||||||||||||| |||||||||||||| || || |||||||| |||||||| || | ||| ||| | | ||||  ||| |||||||| |  || ||||
catgtacaatgggcttgctgtaagcctgtaactaatccagcag-catgacatttctgtttgctaggttagtattgacccatgtgtattgatgtgttttcagATTTTCTTGGACCCAAAGGAGCGCAACAATACCGAATACAAGCTTGAGACCTTCTCCGCAGTCTACCGCAGGCTTTGTGGGAAAGATGTTGCCTTCGAGT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g18570.1 (Oryza sativa), 3'ss of exon 5
--------gtgagtgt-ttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
         || |  | |||| |   ||    || |      | | |   | || ||||| | |  | | | |  |    |   |||||      ||| || ||||||||||||| |||||||||||||| || || |||||||| |||||||| || |  || ||| | | ||||  ||| |||||||| |  |||||||
catgtacaatgggcttgttgtaagcctgtaactaatcctgcag-catgacacttctgtttgctaggttagtattgacccatgtgttttgatgtgttttcagATTTTCTTGGACCCAAAGGAGCGCAACAATACCGAATACAAGCTCGAGACCTTCTCCGCGGTCTACCGCAGGCTTTGTGGGAAAGATGTTGCCTTTGAGT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G030016_T01 (Zea mays), 3'ss of exon 5
---gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagttttt--ccttttgtatcaat----ttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
    |  |  || || |  | ||  ||  |||| |  |   |   || |||  |  ||||||     ||  |  ||  |||| | |   |||    || || ||||||||||||| |||||| | ||||||||||| ||||||||||||||||   |||  || ||| | | |||   ||| |||||||| || |||||||
tgccttggcattagttacctaga-atttctttatacatttatggtttgttggctaacatatagcagcaagttacttaaccttctcttgtaatgccattcagATTTTCTTGGACCCAAAGGAGAGGAACAACACTGAATACAAGCTGGAGACCTGCACTGCGGTCTACCGCAGGCTGTGTGGGAAAGATGTGGTCTTTGAGT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G085420_T01 (Zea mays), 3'ss of exon 6
gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatat--------aaatt--taaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
|       || || |    |   | | ||  ||    ||    |||  |  |  | ||        || ||  | ||  ||||| | |  | |||  || || ||||||||||||| |||||| | |||||||| || ||||||||||||||||   ||| ||| ||| | | |||   ||| ||||||||           
gccttgacttttgttacctagaattgcttggatacatttatggtttcatggctaacatcatgcagcaagttacttaaccttttcttgtaatgtca--ttcagATTTTCTTGGACCCAAAGGAGAGGAACAACACCGAATACAAGCTGGAGACCTGCACTGCAGTCTACCGCAGGCTGTGTGGGAAAGATGTG----------

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G48830.2 (Arabidopsis thaliana), 3'ss of exon 5
gtgagt--gtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
|| |||     |  || | | ||     |  |        | | |||||||||  |  ||||||   |          ||||| |   || ||||| ||||||||||| |||||  | |||||||| ||||||||| | ||| | || ||||  ||||||| |||||| ||||| |||||||| || |||||||
gtaagtcaaaattcgaagattattaccatacaggaagatgtaattttttgtttatctaataaatggga----------tttgtgt-ggttgaagGTCTTCTTGGACCCAAAGGAAAGGAACAACACAGAGTACAAGGTTGAGGCTTTCTCTGCGGTTTACAAGAAGCTCACTGGCAAAGATGTCGTCTTTGAGT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: EDO96962 (Chlamydomonas reinhardtii), 3'ss of exon 4
----------gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
           |   ||| |||   | ||||    || |      |               |||          |  | |    |   ||       || ||||   | ||||||||||||| ||||||  ||| ||||||||||||||||||||     | || |||| |   || || |                     
gattgcgctctttgttgtgtgtcgcggtgatcgccgtctgtgctgcacccgtgcccgacccccccccccccgccactgctgcaacacgtgcgctg--ttcagGTGCACCTGGACCCCAAGGACCGCAACTCCACCGAGTACAAGCTGGAGACCTTCGGCAGCGTGTACAAGCGCCTCACAG---------------------

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ26379 (Selaginella moellendorffii), 3'ss of exon 4
gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
                     || ||   |||   || || ||||  |   | |   | |     |  |     | ||| |         |||| | | | ||||||||||| ||||||| ||| ||||||||| ||||||| |  || || || |||| |||||| ||||| || ||||| | ||||||||
---------------------gtaaga--aaactccccttcatttccggcgctctagtga---cgagctcgaaacgtttttgc-------agGTCTACCTTGACCCCAAGGAACGCAACAGCACCGAGTACAAGTTGGAGACGTACTCGGGTGTCTACAAGAAGCTGACTGGCAAGGATGTGGCATTTGAGT

upper sequence: GLYMA19G06730.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ14715 (Selaginella moellendorffii), 3'ss of exon 4
gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccat--ataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
                       ||    || |  |||| | ||   |  | | |   |  |  |  ||   |||             ||  |||| | | | ||||||||||| ||||||| ||| ||||||||| ||||||| |  || || || |||| ||| || ||||| || ||||| | ||||||||
----------------------gtaagaaaactccccttcatttccggcgttctagtgacgagctcgaaacgttt-------------ttgcagGTCTACCTTGACCCCAAGGAACGCAACAGCACCGAGTACAAGTTGGAGACGTACTCGGGTGTCTACAAGAAACTGACTGGCAAGGATGTGGCATTTGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308855|gb|FK002079.1|FK002079
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213608685|gb|DB968972.1|DB968972
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213599407|gb|DB979991.1|DB979991
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|31310718|gb|CD395921.1|CD395921
EST:     GATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: GATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|57574086|gb|CX547061.1|CX547061
EST:     GTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: GTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|15337280|gb|BI497936.1|BI497936
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|193377575|gb|FK338845.1|FK338845
EST:     TTGTTGGCAAACGGGCCGGATATAGAATTGATGGCTCAAAAATAATGAAGG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGAC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAA-Ggtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGAC
EST: gi|192294704|gb|FG986553.1|FG986553
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|214007768|gb|DB986134.1|DB986134
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213607947|gb|DB983888.1|DB983888
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|192326800|gb|FK018552.1|FK018552
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|209721156|gb|BW659182.1|BW659182
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|7924457|gb|AW830483.1|AW830483
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|209702954|gb|BW667462.1|BW667462
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|57574260|gb|CX547235.1|CX547235
EST:     GTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: GTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|151393160|gb|EV263035.1|EV263035
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|192302418|gb|FG995902.1|FG995902
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|18040430|gb|BM308724.1|BM308724
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAA                         GTTTTTCTTGGACCC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTT-CTTGGACCC
EST: gi|209702953|gb|BW667461.1|BW667461
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|192296560|gb|FG989132.1|FG989132
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|209702508|gb|BW667141.1|BW667141
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213614970|gb|DB978361.1|DB978361
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|151408391|gb|EV278199.1|EV278199
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213597844|gb|DB962197.1|DB962197
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGG
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGG
EST: gi|6719023|gb|AW306670.1|AW306670
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTNTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213592415|gb|DB971599.1|DB971599
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|298173686|gb|HO017022.1|HO017022
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|21676100|gb|BQ628451.1|BQ628451
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|58014414|gb|CX701156.1|CX701156
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|7147149|gb|AW509071.1|AW509071
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCATAG-AGCGCAACAACACTGAGTACAGGCTAGAGAC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCA-AGGAGCGCAACAACACTGAGTACAAGCTGGAGAC
EST: gi|16346842|gb|BI972437.1|BI972437
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|213601218|gb|DB956512.1|DB956512
EST:     TGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAAG                         GTTT-CTTGGACCCCAAGGAGCGCAACAACA
genomic: TGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAA-Ggtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACA
EST: gi|209702507|gb|BW667140.1|BW667140
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|9986818|gb|BE660926.1|BE660926
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|42723067|gb|CK768966.1|CK768966
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|254325477|gb|GR838358.1|GR838358
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGGAC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAG-AC
EST: gi|7145885|gb|AW507807.1|AW507807
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAA-TAATGAAG                         GTTGTCT-GGACCACAAGGAGCGCA-CAACACTGAGTACA-GCCTG-AGAC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGC-TGGAGAC
EST: gi|192302419|gb|FG995903.1|FG995903
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|4285038|gb|AI440856.1|AI440856
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACC
EST: gi|298181684|gb|HO025859.1|HO025859
EST:     TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAATAATAATGAAG                         GTTTTCTTGGACCCCAAGGAGCGCAACGACACTGAGTACAAGCTGG
genomic: TTGTTGGCAAACGGGCCAGATATAGAATTGATGGCTCAAAAATAATGAAGgtgagtgttt ... tcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT
 ctttaat  putative branch site (score: 4)
                               tttttccttttgtatc  putative PPT
                 atataaatttaaagtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgtttgtgatgttgatgttagtttaaatgtcctttaatttttgtttcccatataaatttaaagtttttccttttgtatcaatttaagGTTTTCTTGGACCCCAAGGAGCGCAACAACACTGAGTACAAGCTGGAGACCTTTTCTGGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTATTTGAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG