1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acttggcgttagcctatgatgatctctatccctcacatcttctaattacttacatattgatagtgttgtattcatccaaaagatttggtttatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGGTGGAGCTGTTGCATTAAAGATACACCTGAAACAGCCTAAGGCATGGGA
species | Glycine max |
transcript | GLYMA19G06470.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGEST: gi|209696543|gb|BW655696.1|BW655696
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGEST: gi|254346011|gb|GR859658.1|GR859658
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGEST: gi|213595389|gb|DB966527.1|DB966527
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGEST: gi|192321512|gb|FK011770.1|FK011770
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAGATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCGTGGEST: gi|15203020|gb|BI425788.1|BI425788
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
EST: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAG AAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
genomic: TTTTGATGGACTTGTTGATGATGTCATTGAGCATTACTCAAAAATCAAAGgtatttatat ... tatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGG
ttacttacatattgatagtgttgtattcatccaaaagatttggtttatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGGTGGAGCTGTTGCATTAAAGATACACCTGAAACAGCCTAAGGCATGGGA
atattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttggcgttagcctatgatgatctctatccctcacatcttctaattacttacatattgatagtgttgtattcatccaaaagatttggtttatgtggcagAAAATCCAGAGTTCCATTCTCTTCCCAGCTTCCTATTTGGACAGTCCATGGGTGGAGCTGTTGCATTAAAGATACACCTGAAACAGCCTAAGGCATGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - cctatga
- - - - - - - - - - - - - - -ccctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagtg