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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatttaacagttgtataagatgaggattctatttacactccccggtagattcttgcattgtgtttctaagaaggttgatgtttctatgatgttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTTTTAAATCTGGT

Basic information

species Glycine max
transcript GLYMA19G05900.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020644|gb|CX707386.1|CX707386
EST:     TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTG                         GCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
genomic: TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGgtatgtatat ... gttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
EST: gi|17964676|gb|BM271407.1|BM271407
EST:     CAGTTGGATTCAATATGCTCAAATGAACTTG                         GCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
genomic: CAGTTGGATTCAATATGCTCAAATGAACTTGgtatgtatat ... gttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
EST: gi|51336477|gb|CO980343.1|CO980343
EST:     TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTG                         GCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
genomic: TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGgtatgtatat ... gttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
EST: gi|19346035|gb|BM890915.1|BM890915
EST:     GTTGGATTCAATATGCTCAAATGAACTTG                         GCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
genomic: GTTGGATTCAATATGCTCAAATGAACTTGgtatgtatat ... gttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACT
EST: gi|31471379|gb|CD413407.1|CD413407
EST:     TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTG                         GCAATCCAGATGTCATTTCAAATGTACTCGGGTAGAGTAGGATGTAAAACA
genomic: TAAATTTCATGAACGGGTACAGTTGGATTCAATATGCTCAAATGAACTTGgtatgtatat ... gttcttacagGCAATCCAGATGTCATTTCAAATGTACT-GGGTAGAG-AGGATGTAAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattcttgcattgtgtttctaagaaggttgatgtttctatgatgttcttacagGCAATCCAGATGTCATTTCAAATGTACTGGGTAGAGAGGATGTAAAACACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTTTTAAATCTGGT
                           ggttgat  putative branch site (score: 5)
                                            tgttctt  putative PPT
                 tttctaa  TA-rich tract