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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagacaatatcattctttgatccatttcagtattttcttttctttgcttcaatttaaacgtgtctctattgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGG

Basic information

species Glycine max
transcript GLYMA19G02110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G02110.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g27340.2 (Oryza sativa), 3'ss of exon 4
---gttagtagacaatatcattctttgatcca-tttcagtattttcttttctttgct--tcaatttaaacgtgtctctattgca-----tcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGG
         |  |   | ||||||  | |  | ||||  ||  |  |||| | |  |  | |||   |   |   | | ||||      | ||| ||||| || || || |||||||| || ||| |||||||  |||||||||| ||||| | |||||||||||||||||||  |||||||| | | || ||
gtatccgaaatgcctaaccattctaggttaaaatttctctacctcattttttgtaatcattaatggtattatcattatcttgcccatgtttagATAATGGCGAATCCATTCAAATATTACATTATCAGAATGGCGAGAAGTATGAGCCACACTATGATTACTTCCATGACAAAAATAATCAAGCTCTTGGAGG

upper sequence: GLYMA19G02110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G28480.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------gttagtagacaatatcattctttgatccatttcagtattttcttttctttg---cttcaatttaaacgtgtctctattgc--atcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGG
                ||   ||||     | ||||| |       || ||  |||  ||   |        |||  |      ||||| | ||||  ||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || ||| | ||||||| ||   | |||||
gtatttttggccatatgtacatagatttcctaattctgtctctttgtttagactttagttgcttacaacttctcatctcttttttgtctgtgttgcggatcagAGAATGGTGAATCCATGCAAATATTGCATTATGAGAATGGTCAAAAGTATGAACCGCATTTTGACTACTTTCACGACCAGGCTAATCTAGAGCTCGGTGG

upper sequence: GLYMA19G02110.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0066g02170.t01 (Vitis vinifera), 3'ss of exon 5
---------gttagtagacaatatc-attctttgatccatttcagtatttt---cttttctttgcttcaatttaaacgtgtctctattgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGG
          ||  |    |  ||  |||  || |     |  || || |    | | |  || ||||  |||  |  |   |||  |  |||||| ||||| ||||| || |||||| ||||||||||||||||| | |||||||| || ||||||||||| || |||||||| | ||||||| |  | |||||
gtaagctcctttgatttctataattgatttgttaaaatcataaaggatataaaacatcttattccttcttttttgaacttgatcttcta-atcagAAAATGGCGAGTCCATTCAAATACTGCACTATGAGAATGGTGAAAAGTATGAGCCGCATTTTGATTATTTTCATGACAAGGTTAATCAACTACTTGGTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323326|gb|FK018977.1|FK018977
EST:     AGTTGCTGGTATTGAAGCCCGAATTGTCGCATGGACATTCCTTCCTGTAG                         AGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG
genomic: AGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAGgttagtagac ... attgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG
EST: gi|298171907|gb|HO021499.1|HO021499
EST:     AGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAG                         AGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG
genomic: AGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAGgttagtagac ... attgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG
EST: gi|298177415|gb|HO027196.1|HO027196
EST:     AGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAG                         AGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG
genomic: AGTTGCTGGTATTGAAGCCCGAATTGCCGCATGGACATTCCTTCCTGTAGgttagtagac ... attgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcagtattttcttttctttgcttcaatttaaacgtgtctctattgcatcagAGAATGGTGAGTCGATGCAAATATTGCACTATGAGAATGGTCAGAAGTATGAACCACATTTTGATTACTTCCATGACAAAGCTAATCAAGTTATGGGTGG
                                        tctctatt  CT-rich tract
        tattttcttttcttt  TA-rich tract