1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTA
species | Glycine max |
transcript | GLYMA19G01210.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|14991352|gb|BI317025.1|BI317025
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|254342880|gb|GR859042.1|GR859042
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|31463969|gb|CD405997.1|CD405997
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|15664582|gb|BI701953.1|BI701953
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|11689652|gb|BF597328.1|BF597328
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|254340370|gb|GR858495.1|GR858495
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|6667256|gb|AW278707.1|AW278707
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCGTGACTCCTCATATTTCTGGTACCACCATTGATGCACAG ATACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|10255348|gb|BE823114.1|BE823114
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|15201822|gb|BI425077.1|BI425077
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|7232694|gb|AW568048.1|AW568048
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|207774417|gb|GD746283.1|GD746283
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|254344633|gb|GR855504.1|GR855504
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|13787324|gb|BG649916.1|BG649916
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|11689634|gb|BF597310.1|BF597310
genomic: CATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|209713325|gb|BW684412.1|BW684412
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|42722694|gb|CK768593.1|CK768593
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTAC-ACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCEST: gi|213606749|gb|DB980637.1|DB980637
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTC
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|209718223|gb|BW657842.1|BW657842
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTEST: gi|13791666|gb|BG654257.1|BG654257
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAGAGGGCATGCTTGATAGGCTCTTCAAGGGEST: gi|151395171|gb|EV265042.1|EV265042
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCA-AAGACATGCTTGATAGGCACTTCAAGGG
EST: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAG TTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
genomic: CAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGgtattttcat ... tgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGT
tcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTA
tactaaa putative branch site (score: 1)
cttgtttttc putative PPT
taattaattaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcattaagtttctatatcattattcattagcttagctttttgtgtctaagttctttctttcacttgatggaacactaattaattaattaatactaaaccatacttgtttttcagTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG