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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttcttctaccccgtctaaatatgtttactataatattccctgtgaccactttatagttgttctttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA

Basic information

species Glycine max
transcript GLYMA19G00420.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00420.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g48980.1 (Oryza sativa), 3'ss of exon 4
---------gtgtttttcttctaccccgtctaaatatgtttactataatattccctgtgaccactttat-agttgttctttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
          | | | |  |  |  |  |   | |  || ||  | |||||    | |  | ||| | | | |   |  || | ||  | ||    ||  ||||   | || || ||||| ||| |||||||||| |||||||| ||||||||||||||| |  |  | ||| || |||||  | ||  |||||  ||   ||
gtaattgaaatatatattgttcattcatttccatttggtctataaaaatataagttttttcaactctgttaatcccttcttgtttggct-ttgcaactg-cagGCTCTTGGAGTGCCCACAGGTTCTCATGGTGCTTTCCGTGACTATCAAGTTGATGCAGTTTCTTTAGAATTTGCACCAGCATTTCATCTTAAAAACGAGA

upper sequence: GLYMA19G00420.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G054470_T01 (Zea mays), 3'ss of exon 5
gtgtttttcttctaccccgtctaaatatgtttactataatattccctgtgaccactttatagttgttctttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA--
||  |     |  ||     |   | |  || |    |   |||  | | |  |||  | |||   |||| ||  | || || ||     ||||   | || || ||||| ||  | |||||||| |||||||||||||||||||||||  |  |  | ||| ||||||||| | ||  | | |  |||||||  
gtagtagaaattaacttttccattacaccttaatgtcacgtttcttttttatgactccacagtccctctt-attgggat-ttgtttgatacagGCTCTTGGAGTGCCCACAGGGTCCCATGGTGCTTTCCGTGATTATCAAGTTGATGCGGTTTCTTTAGAATTTTCACCAACATTTCATGTCA--AAAATGAGA

upper sequence: GLYMA19G00420.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0066g00580.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------------------------------------gtgtttttcttctaccccgtctaaatatgttt--actataatattccctgtgaccactttatagttgttctttatctgtatattattc-ctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
                                                                          |    |||||  | |    |||  || ||     |  |  |||||   | |  |    | |||  |     || | | ||||||     ||  ||||  || ||||||||||||||  | |||||||| || |||||||| ||||| |||||||| ||  |||| |||||||| |||||| || | | ||| | ||
gtgcatagcacttttagttgtttatttgttatctttgtgacaaaagtggtttgagggggagggtttgggtggttgatactttctatttcatgttctgcatttgaaaggataaacatatttggtttttctcactaataactaagagttgtgtttatatttcctgctgccagGCATTGGGTGTTCCCACTGGCTCCCATGGTGCTTTTCGTGATTACCAAGTCGATGCAATTACTTTGGAGATTTCACCTAAAGTTGCTTTGAATAATAAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23725483|gb|BU760697.1|BU760697
EST:     CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAG                         GGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTT
genomic: CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAGgtgtttttct ... ttcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTT
EST: gi|192319893|gb|FK012955.1|FK012955
EST:     CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAG                         GGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTT
genomic: CTGAGTATGTTGAGGGTGCTGCTACACTGGCAAGTTCATTGTATTACCAGgtgtttttct ... ttcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattccctgtgaccactttatagttgttctttatctgtatattattcctctcagGGCTTAGGTGTTCCCACTGGTCCTCATGGTGCCTTCCGTGATTATCAAGTTGATGCAATCACACTGGAAATTTCACCAAAAGTTTCTCTTACTAAAATGA
                                          ttattcctctc  CT-rich tract
                              tttatctgtatattat  TA-rich tract