1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtagcatttatttatttcatgtactctttgtacataggtctagtaacttttctgtacttcatttcaatagaaatgaatggtggaatcagtttaggttattctactcaaattttattctattgtttgctttaaatattttcaatttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAAAGCATTTGATCGCAAAGGTCATGTTGCAAAACTTTGCATTGTTTTTCT
species | Glycine max |
transcript | GLYMA18G53100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAG GGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAEST: gi|18040504|gb|BM308798.1|BM308798
genomic: AAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAGgtatgtagca ... ttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAA
EST: A-GGTCATAAAGGAAGGATACNAGAGTTTCCCCAAGTGGTCATACTTCAG GGTCATTTTCTGGTCTGGGGTTTTTATCATTGTACTTATCTGGAAAAATAAEST: gi|192294776|gb|FG986625.1|FG986625
genomic: AAGGTCATAAAGGAAGGATACAAGAGTTTCCC-AAGTGGTCATACTTCAGgtatgtagca ... ttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAA
EST: AAAG-TCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAG GGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGG
genomic: AAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAGgtatgtagca ... ttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGG
ttctactcaaattttattctattgtttgctttaaatattttcaatttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAAAGCATTTGATCGCAAAGGTCATGTTGCAAAACTTTGCATTGTTTTTCT
aaattttattctattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagcatttatttatttcatgtactctttgtacataggtctagtaacttttctgtacttcatttcaatagaaatgaatggtggaatcagtttaggttattctactcaaattttattctattgtttgctttaaatattttcaatttatgtgcagGGTCATTTTCTGGTCTGGGTTTTTTATCATTGTACTTATCTGGAAAAATAAAAGCATTTGATCGCAAAGGTCATGTTGCAAAACTTTGCATTGTTTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG