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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgcttaaataaagtacttgttctctgttatgccatctgtaattcttttgggtactaatttatttcaaatgcatatttcagGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAATTGCTG

Basic information

species Glycine max
transcript GLYMA18G52540.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52540.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0019g00680.t01 (Vitis vinifera), 3'ss of exon 8
gtgatgcttaaataaagtacttgttctctgttatgccatc----tgtaattcttttgggtactaatttatttcaaatgcatatttcagGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAATTGCTG
||| ||| | ||| |  || |  ||   | | ||  || |    || || ||| ||    | |  |||||||| ||  ||| |  ||||| ||| | |||||| | | |  ||| |  |||||||||||||||||||||||| |||| |||| ||||||||| ||| |  | || || ||  | || |
gtgctgcatcaattacatattgatttcttatgataacaacatggtgaaagtctctt----att--tttatttccaaatcatttggcagGAGATGATCAGTTCTCCCACATTAGCTTCTAGGGTTCGTGCTTTTGATTTAATTTTAAATCTTGGGGTTCATGCTCATTTATTGGAGCCAATGGTAGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatgccatctgtaattcttttgggtactaatttatttcaaatgcatatttcagGATATGCTTAGTTCTTCTAAAACAGCATGCAGGGTTCGTGCTTTTGATTTAATTCTAAACCTTGCGGTTCATGCACATCTCCTAGAACCGATAATTGCTG
                          tactaat  putative branch site (score: 1)
                             taatttatttcaaatg  TA-rich tract