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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtacataaaagtcttaaattttgcaaattactaaatttctaaatttacattgcagttgtctgaattgctttctcttgttaGATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTATACGTGCTTTCAATATTCCGAGA

Basic information

species Glycine max
transcript GLYMA18G51920.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732856|gb|BM527287.1|BM527287
EST:     ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAA                         GATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA
genomic: ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAAggtacataaa ... tctcttgttaGATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA
EST: gi|17023874|gb|BM094908.1|BM094908
EST:     ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAA                         GATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA
genomic: ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAAggtacataaa ... tctcttgttaGATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA
EST: gi|6915558|gb|AW397088.1|AW397088
EST:     ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAA                         GATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA
genomic: ACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAAggtacataaa ... tctcttgttaGATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattactaaatttctaaatttacattgcagttgtctgaattgctttctcttgttaGATAATTTCTCAGCACCCCGATCTAAAAGTTCGGACTCTCCATGACGAGTATACGTGCTTTCAATATTCCGAGA
                                       ttgctttctcttgtt  CT-rich tract
 taaatttctaaattta  TA-rich tract