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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctactcttataatctgtacctctgatgcagaatacattttgaaatttttgatgaagtctgtttagtaaattgattcatgcttaaaggccaacttgtgctcattggcatcttcaattatttttttgattgtgacttcattttttttggtatgatctggtcgtcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG

Basic information

species Glycine max
transcript GLYMA18G51520.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51520.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 3'ss of exon 4
gtaagctactcttataatctgtacctctgatgcagaatacattttgaaatttttgatgaagtctgtttagtaaattgattcatgcttaaaggccaacttgtgctcattggcatcttcaattatttttttgattgtgacttcattttttttggtatgatctggtcgtcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
                                                            |  ||| ||  |  |  ||  ||  | | | |   | || || |   | |||   |   ||  || |   |  |      ||||| |   | |    | |  |   |||||||| || |||||||||||||| || ||||| ||| | |||||||||||||| || ||||| ||||||||||||||
------------------------------------------------------------gaatgtctaacatgtccatatatcataacaag---atttctggttggtagcaaaatt--ttgcttctccaaaggca----catttctaaagatgccttttcattaacagGTTTCAGATTTTGGGCTTGCAAAGTTAGCATTGGATGCCAATACACATGTAACCACTCGTGTGATGGGAACCTTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193539701|gb|FK495185.1|FK495185
EST:     GAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAA                         GTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTA
genomic: GAGATATTAAGTCATCAAACATCCTACTTGATCTCAACTATGAAGCTCAAgtaagctact ... tggtcgtcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaattatttttttgattgtgacttcattttttttggtatgatctggtcgtcagGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGG
           ttttgat  putative branch site (score: 4)
     ttatttttttgattgt  TA-rich tract