1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttgtaatagatctttttgagaatcagataatccaaattggatttattcatcaaatgatgttatcatcaaaaagattttttcccatgtttttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
species | Glycine max |
transcript | GLYMA18G49770.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGEST: gi|193414561|gb|FK379283.1|FK379283
genomic: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
EST: ATGAAAATATTCCTAATTCTCTTCAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGEST: gi|208161964|gb|GD962751.1|GD962751
genomic: ATGAAAATATTCC-AAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
EST: TTCCAAATCTCTTCTAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGEST: gi|254336679|gb|GR842858.1|GR842858
genomic: TTCCAAATCTCTTC-AAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
EST: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGEST: gi|208263578|gb|GE063376.1|GE063376
genomic: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
EST: TCTCTTCAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGEST: gi|151395613|gb|EV265490.1|EV265490
genomic: TCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
EST: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAG GGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
genomic: CCCTTCCTTTTGATGATGAAAATATTCCAAATCTCTTCAAGAAAATAAAGgtattgttaa ... tttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTG
tattcatcaaatgatgttatcatcaaaaagattttttcccatgtttttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
ttttttcccatgtttt CT-rich tract
ttatcatcaaaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgtaatagatctttttgagaatcagataatccaaattggatttattcatcaaatgatgttatcatcaaaaagattttttcccatgtttttcatgtagGGTGGGATTTACACTCTTCCCAGTCATCTATCACCCGGTGCTAGAGATTTGATACCAGGGATGCTTGTGGTTGACCCTATGAGGAGAATGACCATACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA