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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtcctagcccatcatcatgtgttattttttaaaaattgtgctttggatccctttctaccttttaatttaacaagtcctctataaggaatttaattgatctttgagggtcatttcaGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACT

Basic information

species Glycine max
transcript GLYMA18G48710.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186754|gb|HO037387.1|HO037387
EST:     GGGAATAGTAAGAGGAAAGCTGGATCATCTGCGGCAATGCTTTCA                         GGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTAT
genomic: GGGAATAGTAAGAGGAAAGTTGGATCATCTGCGGCAATGCTTTCAggtcctagcc ... ggtcatttcaGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatttaacaagtcctctataaggaatttaattgatctttgagggtcatttcaGGTCCAGTTTGCAGCATGTAGGGACTTGAGGCATGCTCAACTAGGGAGTATGATACAAACACTCTCTAACT
                                               tcatttc  CT-rich tract
                   tataaggaatttaatt  TA-rich tract