1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
taaatatctattgcattcaatttcaatatccattataattttctggttaaaattttaatagatgtgccaacttcaattatttcattcattttatttctaatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTG
species | Glycine max |
transcript | GLYMA18G48370.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAA CAGGTCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAEST: gi|209696818|gb|BW680440.1|BW680440
genomic: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAGtaaatatcta ... taatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
EST: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAA CAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAEST: gi|193567063|gb|FK523316.1|FK523316
genomic: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAGtaaatatcta ... taatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
EST: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAA CAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAEST: gi|208105239|gb|GD905468.1|GD905468
genomic: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAGtaaatatcta ... taatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
EST: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAA CAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAEST: gi|193608170|gb|FK557083.1|FK557083
genomic: TGGCAGAGTTGCAGATATCATTCAGATTCCAGCATTCTTGTGTCGCCAAGtaaatatcta ... taatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
EST: CTTGTGTCGCCAAA CAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
genomic: CTTGTGTCGCCAAGtaaatatcta ... taatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGA
ttttaatagatgtgccaacttcaattatttcattcattttatttctaatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTG
ttctaat putative branch site (score: 2)
ttcattttatttct CT-rich tract
ttcaattatttcattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatatctattgcattcaatttcaatatccattataattttctggttaaaattttaatagatgtgccaacttcaattatttcattcattttatttctaatgacagaCAGATCTTCTAGTTGCAGCAGCCAAAACTGGGAAAATTATCAACATTAAGAAGGGCCAGTTCTGTGCTCCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG