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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaataataatttttttctttagcatcatgtttgtttctgtattattatattgaaataccatatagtggtacaagagttttgtgtttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTGGGTTCCTCAGTGTGTACCACCTTAGTTGAG

Basic information

species Glycine max
transcript GLYMA18G46140.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693048|gb|AW761146.1|AW761146
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|14992012|gb|BI317685.1|BI317685
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|15815736|gb|BI788011.1|BI788011
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58019988|gb|CX706730.1|CX706730
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|11412081|gb|BF424092.1|BF424092
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|22523238|gb|BU082049.1|BU082049
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|15001018|gb|BI321832.1|BI321832
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGTCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|298169267|gb|HO020627.1|HO020627
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7926421|gb|AW832447.1|AW832447
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTAGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTATACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7284130|gb|AW596728.1|AW596728
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTNTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7691215|gb|AW759346.1|AW759346
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|19347697|gb|BM892485.1|BM892485
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|13251950|gb|BG362853.1|BG362853
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|17400319|gb|BM177101.1|BM177101
EST:     AGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: AGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58023442|gb|CX710183.1|CX710183
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTCGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|22523317|gb|BU082128.1|BU082128
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7926211|gb|AW832237.1|AW832237
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7796633|gb|AW782030.1|AW782030
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|15663457|gb|BI700828.1|BI700828
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7693120|gb|AW761217.1|AW761217
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|15814527|gb|BI786802.1|BI786802
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|9564862|gb|BE474371.1|BE474371
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|18725662|gb|BM523624.1|BM523624
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|27809248|gb|CB063670.1|CB063670
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|192332475|gb|FK024236.1|FK024236
EST:     TTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|4395943|gb|AI494940.1|AI494940
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCT
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCT
EST: gi|12496148|gb|BG046919.1|BG046919
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGATGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|16348826|gb|BI974421.1|BI974421
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|13481238|gb|BG510581.1|BG510581
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGTCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7925277|gb|AW831303.1|AW831303
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|7693089|gb|AW761187.1|AW761187
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG
EST: gi|15661823|gb|BI699194.1|BI699194
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACTGAACTAATTGGTCGGATATCTCTTTACTGTTGGCTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattatattgaaataccatatagtggtacaagagttttgtgtttaattacagAATAAAGAGCGCACTGAACTAATTGGCCGGATATCTCTTTACTGTTGGCTGGGTTCCTCAGTGTGTACCACCTTAGTTGAG
                                           gtttaat  putative branch site (score: 4)
                                     ttttgtgtttaatta  TA-rich tract