1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ggtacatagacttggccaaacacctaacttagtcccatgtgcttttccaactctttttaaactaagctttaggttggtcaattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATG
species | Glycine max |
transcript | GLYMA18G44820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|192312271|gb|FK005275.1|FK005275
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|193384258|gb|FK349746.1|FK349746
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: GATTATGTTCACGGCAAGGGTACTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|151412992|gb|EV282800.1|EV282800
genomic: GATTATGTTCACGGCAAGGGT-CTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: AAATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|298193345|gb|HO033779.1|HO033779
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGEST: gi|213596908|gb|DB964115.1|DB964115
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATG
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|193530996|gb|FK487097.1|FK487097
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCEST: gi|24206259|gb|BU965512.1|BU965512
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
EST: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTG GGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
genomic: AGATTATGTTCACGGCAAGGGTCTTAAGCTTGGAATTTATTCAGATGCTGggtacataga ... caattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTC
cccatgtgcttttccaactctttttaaactaagctttaggttggtcaattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATG
tctttttaaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtacatagacttggccaaacacctaacttagtcccatgtgcttttccaactctttttaaactaagctttaggttggtcaattttgcaGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG