1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctaaaaacaaaaacatgcaacatcaacatcaaaatctgttgtgtatatgcttatttctctatgttgaagcttattctaaattacttgttggacttgcagcTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
species | Glycine max |
transcript | GLYMA18G44590.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGC TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAGEST: gi|7284786|gb|AW597211.1|AW597211
genomic: TCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGGtaagaacata ... gacttgcagcTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
EST: TCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGC TATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
genomic: TCCTACAAAAAAGGACGCACCTCTCCTCTCGCTTTGAAGGGCCAAGCTGGtaagaacata ... gacttgcagcTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
tatgcttatttctctatgttgaagcttattctaaattacttgttggacttgcagcTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
ttctaaa putative branch site (score: 2)
ttattctaaattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaaacaaaaacatgcaacatcaacatcaaaatctgttgtgtatatgcttatttctctatgttgaagcttattctaaattacttgttggacttgcagcTATAGCAAGTATATTGTTTCTGCGGGAGATAAGCTCAATAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - aaacaaa
- - - - - - acatgca
- - - - - - - - - - catcaac
- - - - - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgttg