1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttatgcttgtaagttgtaatggcttgggaactgaataactgctaggtccttttggagttgctaaaatagttgtttatgttgtttcacctcctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTT
species | Glycine max |
transcript | GLYMA18G44520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGC CGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGEST: gi|308098262|gb|HO760003.1|HO760003
genomic: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGGtttgcctctt ... cctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAG
EST: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGC CGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGEST: gi|254339363|gb|GR848080.1|GR848080
genomic: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGGtttgcctctt ... cctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAG
EST: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGC CGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGEST: gi|17400914|gb|BM177696.1|BM177696
genomic: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGGtttgcctctt ... cctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAG
EST: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGC CGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAG
genomic: TGATTGGTGGAGTGTAGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGGtttgcctctt ... cctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAG
ggtccttttggagttgctaaaatagttgtttatgttgtttcacctcctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTT
tgctaaa putative branch site (score: 2)
ttgtttcacctccttt putative PPT
taaaatagttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgcttgtaagttgtaatggcttgggaactgaataactgctaggtccttttggagttgctaaaatagttgtttatgttgtttcacctcctttgcagcCGCCTTTCTGTGGTGGAAACCGTGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - tgcttgt
- - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - actgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt