1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgtgtgctctcatatgtagtgtccctcaattgaaaaggttcaaatttgcatattcctttctttcatttgatttggtggttttgttattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATACTGAAGGTCCTCAAAGATGCAGAATGGGAACCAAGTCTATATTGGAAA
species | Glycine max |
transcript | GLYMA18G43040.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATEST: gi|192325819|gb|FK018041.1|FK018041
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATEST: gi|8282632|gb|BE020193.1|BE020193
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATEST: gi|15662576|gb|BI699955.1|BI699955
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: TGTGGTCTGCTATTAA-AANAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATEST: gi|8826985|gb|BE210715.1|BE210715
genomic: TGTGGTCTGCTATTAAGAA-AAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATEST: gi|192325175|gb|FK017546.1|FK017546
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAATGAGATEST: gi|192312022|gb|FK004275.1|FK004275
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
EST: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCAT TGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
genomic: CTGTGGTCTGCTATTAAGAAAAGAGATAATTGGCAAGATGTCTGCTTCATgtaagtgtgt ... tattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGAT
tcaaatttgcatattcctttctttcatttgatttggtggttttgttattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATACTGAAGGTCCTCAAAGATGCAGAATGGGAACCAAGTCTATATTGGAAA
atttgat putative branch site (score: 5)
ttttgtt putative PPT
ttttgttattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgtgctctcatatgtagtgtccctcaattgaaaaggttcaaatttgcatattcctttctttcatttgatttggtggttttgttattttatagTGATGGAATTCACTTGTCATCCGAGGGAAGCAAGATAGTGTTGAAAGAGATACTGAAGGTCCTCAAAGATGCAGAATGGGAACCAAGTCTATATTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG