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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatatgaatgaacaatgatcccaatctattcaaaatcttatagcctgaagagagcaaatggcgtaatggtctaattcctaatccaactttcttgcagAATGCTAGAGTAAGCTTGGGGGATGTTATTTATCGTTACATCACATCAGATCATTTTTCTCCCGAGTGCTTGCTAGCTTGCCTTGATTTATCTTCTGAGC

Basic information

species Glycine max
transcript GLYMA18G41330.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426175|gb|CA937695.1|CA937695
EST:     CTTTAGAGGAAATGGACATTCCTGAGTCCTATTTGGAATCTCTTCCAAAG                         AATGCTAGAGTAAGCTTGGGGGATGTTATTTATCGTTACATCACATCAGAT
genomic: CTTTAGAGGAAATGGACATTCCTGAGTCCTATTTGGAATCTCTTCCAAAGgtatgatatg ... tttcttgcagAATGCTAGAGTAAGCTTGGGGGATGTTATTTATCGTTACATCACATCAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgaagagagcaaatggcgtaatggtctaattcctaatccaactttcttgcagAATGCTAGAGTAAGCTTGGGGGATGTTATTTATCGTTACATCACATCAGATCATTTTTCTCCCGAGTGCTTGCTAGCTTGCCTTGATTTATCTTCTGAGC
                                 tcctaat  putative branch site (score: 2)
                                            ctttcttgc  putative PPT
                           tctaatt  TA-rich tract