1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagtttggagtaaggggcttttttatgaacatgctgagttttttttttctttttctttttttaatttttccatctttcctcactttctatactgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGGAAGGATGATGAGCTTCTCCAGACTGAAACCAGAACCATAACTAGATCT
species | Glycine max |
transcript | GLYMA18G39930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGAACAAAGATGGAGGTEST: gi|58019799|gb|CX706541.1|CX706541
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGA-CAAAGATGGAGGT
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|213620500|gb|DB957344.1|DB957344
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACNATTATAAG GGCTGGTGGCTTGCAAEST: gi|208106222|gb|GD905149.1|GD905149
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAA
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|214006979|gb|DB988430.1|DB988430
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: GGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGGCTTCGGGAACTACTTGTAGGEST: gi|208098334|gb|GD894755.1|GD894755
genomic: GGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAGG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|208194340|gb|GD987623.1|GD987623
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|193443566|gb|FK409256.1|FK409256
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|208279633|gb|GE081260.1|GE081260
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|151397652|gb|EV267525.1|EV267525
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|208252188|gb|GE046592.1|GE046592
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|193581596|gb|FK538299.1|FK538299
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|58022869|gb|CX709610.1|CX709610
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|192327079|gb|FK015471.1|FK015471
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACEST: gi|58016336|gb|CX703078.1|CX703078
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGG-CTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTAC
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|208110158|gb|GD907246.1|GD907246
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGEST: gi|207711258|gb|GD694715.1|GD694715
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAG
EST: CCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|8825861|gb|BE209591.1|BE209591
genomic: CCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|58019388|gb|CX706130.1|CX706130
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGEST: gi|7028397|gb|AW458180.1|AW458180
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
EST: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAG GGCTGGTGGCTTGCAAGACAAAGATGGACGTCTTCGGGAACTACTTGTAGG
genomic: AAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGgtacatcaac ... actgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGG
tttctttttctttttttaatttttccatctttcctcactttctatactgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGGAAGGATGATGAGCTTCTCCAGACTGAAACCAGAACCATAACTAGATCT
tcctcac putative branch site (score: 2)
tttttccatctttcct CT-rich tract
ttttctttttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttggagtaaggggcttttttatgaacatgctgagttttttttttctttttctttttttaatttttccatctttcctcactttctatactgagccagGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGGAAGGATGATGAGCTTCTCCAGACTGAAACCAGAACCATAACTAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT