Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

cgtaagtcgtaatgtctctgcaaatgcatgaacctttcaccattataaaaactttttctaatgcttatatcttgttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCTACCAAGTTGGTGCAACAATGAGAATGACCGGATTCCATTCTGTCAGATT

Basic information

species Glycine max
transcript GLYMA18G17350.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G17350.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 3'ss of exon 6
cgtaagtcgtaatgtctctgc-----aaatgcatgaacctttcaccattataaaaactttttctaatgcttatatcttgttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCTACCAAGTTGGTGCAACAATGAGAATGACCGGATTCCATTCTGTCAGATT-
 ||||||   ||   |  |||     |  || ||| | |||||  |    || ||  ||  | |||      | |  |  |  |  |||||||| |||||||| ||||| | ||| || ||| |||||||| |||| || ||||||||||||  | ||||  |||  ||| | |  ||||| |||||  
-gtaagtatcaactgccttgctgtatacgtggatgcatctttcctctccttacaa--ttgctgtaacatggctttactactgctcacagATTCGTGATGCATATATGCTTAAAATCTTTGAGAACAACCAATCACGTCTGCCAAGTTGGTGCGGCGATGAAGATGGTCGGCTCCAGTTCTGCCAGATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338359|gb|CO982225.1|CO982225
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|120495608|gb|EH223775.1|EH223775
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|120495727|gb|EH223894.1|EH223894
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|9898670|gb|BE607638.1|BE607638
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|214005118|gb|DB985700.1|DB985700
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|37995947|gb|CF807536.1|CF807536
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|13481303|gb|BG510646.1|BG510646
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|192305477|gb|FG997967.1|FG997967
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
EST: gi|254318885|gb|GR828721.1|GR828721
EST:     GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCAC                         CATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT
genomic: GCTGAAGTTTTTGGTCCCATTGCTAATTCCATTCAAGTAACCGAGTTCACcgtaagtcgt ... gttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacctttcaccattataaaaactttttctaatgcttatatcttgttatttgcaGATTCGCGATGCATACATGCTCAGAATTTTCGAGGACAACCAAACACGCCTACCAAGTTGGTGCAACAATGAGAATGACCGGATTCCATTCTGTCAGATT
                           ttctaat  putative branch site (score: 2)
                                         tcttgtt  putative PPT
             attataaaaacttttt  TA-rich tract