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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA

Basic information

species Glycine max
transcript GLYMA18G10380.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10380.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os06g26234.1 (Oryza sativa), 3'ss of exon 5
gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttcca-tgtctatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
                                     || |   | | || |  ||| |  ||| |     ||    |   || ||||     |  |||||| ||   | ||      |||| || ||| | || || || ||||| || ||||| || || |||||||||||||| |||||||||||||| | | ||||||| || |  
------------------------------------gtatttcctaacacctgcctttcggtgttttgtggttactcttaacttcatta----tcaacttttgtttcttccat----tagGTCCTCCCTCATATAAAAGATGCTGGCTATAATGCTATTCAATTGATTGGAATTGTGGAACACAAGGATTACTCTTCTGTTGGCTATAAG

upper sequence: GLYMA18G10380.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G20440.2 (Arabidopsis thaliana), 3'ss of exon 5
gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctata-tattgtaatgggctccattgaatttttacttttattatatgcacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
                                ||| ||  | |  ||| |||    | | |   |  | | || | |||  | |   | | |||||   |    |||   || |   ||||| |||||| |  | ||   ||||||||||||||| ||||||||||||||  |   ||| |||||||||||||||||||||||||| || 
--------------------------------gtacctcctaatgtattcattgtattcttacttgcaatcttattatgcacacatctcagtttttctgtggcctat---caaacatcagGTCCTTCCTCATGTGAAAAGAGCTGGATACAATGCAATCCAGTTGATTGGTGTCCCTGAGCACAAGGATTATTTTACTGTTGGTTATAGG

upper sequence: GLYMA18G10380.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0090g00920.t01 (Vitis vinifera), 3'ss of exon 5
gtttcccccctcatttctttgggttggaatttgtaactaatcaattatacatatcttccatgtctatatattgtaatgggctccattgaatttttacttttattatatg-----cacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
                                ||| ||  |  |||     ||| || | |   |   |  ||||||    ||||     | ||| ||||| |  | |      | || | ||||| |||||| | || || ||||||||||||||||| ||||||||||||||| ||||||| ||||| || ||||   |||| ||||| | |
--------------------------------gtaccttcttgattgctt-tatatttctttcttcctttctgtaatactatccacaagttattttcttttgtgttctattttcctcattacagGTCCTTCCTCATATAAAAGAAGCTGGATACAATGCAATCCAGTTGATTGGAGTTGTTGAGCACAAAGACTATTCCTCTGTAGGTTATAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatattgtaatgggctccattgaatttttacttttattatatgcacaatgcagGTGCTTCCTTACATTAAGGAAGCTGGATACAATGCCATCCAGTTGATTGGAATTGTTGAACACAAGGATTATTTTACTGTTGGTTACAGA
                 tccattgaatttttac  TA-rich tract