1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatctaattttgtgtttgcatttatatattataaataattcaagtttttcttgttttgatttttctaataccattttctctctgtcaacaatattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAAGGCAAAGAGCTTGGGGATTGAATATACTCCTTTGGAAGTGAGCCTCAAG
species | Glycine max |
transcript | GLYMA18G10260.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|209725973|gb|BW654772.1|BW654772
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|105632495|gb|DW246439.1|DW246439
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: CCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|209719184|gb|BW679763.1|BW679763
genomic: CCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|37995480|gb|CF807069.1|CF807069
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACTACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|20812960|gb|BQ297438.1|BQ297438
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACTACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|209711498|gb|BW676753.1|BW676753
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|209713529|gb|BW681530.1|BW681530
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|21602322|gb|BQ612653.1|BQ612653
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|58023323|gb|CX710064.1|CX710064
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|58017050|gb|CX703792.1|CX703792
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|209704301|gb|BW683529.1|BW683529
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|22932196|gb|BU549335.1|BU549335
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|208078652|gb|GD873594.1|GD873594
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAAEST: gi|16106386|gb|BI894126.1|BI894126
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
EST: ATTGTGAAGATTTTACGTGATTTGTACCCGACATTACAACTTCCAGAGAA GTGTGCAGATGATAACCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
genomic: ATTGTGAAGGTTTTACCTGATTTGTACCCGACATTACAACTTCCAGAGAAgtaagtataa ... atattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAA
ttttcttgttttgatttttctaataccattttctctctgtcaacaatattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAAGGCAAAGAGCTTGGGGATTGAATATACTCCTTTGGAAGTGAGCCTCAAG
ttctaat putative branch site (score: 2)
ttttgatttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatctaattttgtgtttgcatttatatattataaataattcaagtttttcttgttttgatttttctaataccattttctctctgtcaacaatattatcagGTGTGCAGATGATAAGCCATATGTGCCAATATATCAGGTATCCAAAGAAAAGGCAAAGAGCTTGGGGATTGAATATACTCCTTTGGAAGTGAGCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - -ttttgtg
- - - - - - - - tgcattt
- - - - - - - - - - - - - - - ataaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtca