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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taatcacattatagggtattctaaattggatttttcctataattcgaattacatccttacataaactttaattgcaatgctgctctgattctttatacttatgcagaCGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGA

Basic information

species Glycine max
transcript GLYMA18G07540.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482105|gb|AW201376.1|AW201376
EST:     CGCAATTATAAATGCTGCTGAATTAGCAAGCTATGATAAAGTGAAACGGA                         CGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTG
genomic: CGCAATTATAAATGCTGCTGAATTAGCAAGCTATGATAAAGTGAAACGGGtaatcacatt ... cttatgcagaCGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTG
EST: gi|17022032|gb|BM093066.1|BM093066
EST:     CGCAATTATAAATGCTGCTGAATTAGCAAGCTATGATAAAGTGAAACGGA                         CGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTG
genomic: CGCAATTATAAATGCTGCTGAATTAGCAAGCTATGATAAAGTGAAACGGGtaatcacatt ... cttatgcagaCGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttacataaactttaattgcaatgctgctctgattctttatacttatgcagaCGATTTTGAAAATTCCAGGGTTCATGGACAATGTCTATACTCACCTACTTGCTGGCTTAGGTGCAGGTCTTTTTGCTGTCTTTATTGGTTCTCCTGTTGA
     tacataaactttaatt  TA-rich tract