1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
cgtaagttgaaaagatattaaattttcttgccatgtttaatatattagatgatattagacattgtatttattttgcacattgaactcagtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGTGGTCAAGGACAGATCTACATACTAATGGTTCTTTTCTCTGAGAGCACA
species | Glycine max |
transcript | GLYMA18G05520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGEST: gi|26045687|gb|CA783193.1|CA783193
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
EST: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGEST: gi|151412353|gb|EV282165.1|EV282165
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
EST: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATA CGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
genomic: GATCTGGCAATGATTCTTTGGCATTTCCCAGCTTTAGGGGGTCTGGAATAcgtaagttga ... ttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATG
agtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGTGGTCAAGGACAGATCTACATACTAATGGTTCTTTTCTCTGAGAGCACA
aactaac putative branch site (score: 1)
ctccgttctt CT-rich tract
taaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtaagttgaaaagatattaaattttcttgccatgtttaatatattagatgatattagacattgtatttattttgcacattgaactcagtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGTGGTCAAGGACAGATCTACATACTAATGGTTCTTTTCTCTGAGAGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA