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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacacatattttaattcctcagtttttgtctactactaaaaacaacccctatttacttacactttctatcaaacaccttcattggtttatgcacgagtatgtactcattgtttcacaaaatatcaaatgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTGAG

Basic information

species Glycine max
transcript GLYMA18G04940.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192297594|gb|FG989916.1|FG989916
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|7284076|gb|AW596675.1|AW596675
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTNTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|26060187|gb|CA803101.1|CA803101
EST:     ACCTA-CAAAGAGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: A-CTATC-TTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|23733745|gb|BU765081.1|BU765081
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|23064070|gb|BU578843.1|BU578843
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|14205440|gb|BG839118.1|BG839118
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|26060092|gb|CA803006.1|CA803006
EST:     GGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAACCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: GGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|10232097|gb|BE800985.1|BE800985
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|6913258|gb|AW394788.1|AW394788
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|151400178|gb|EV269992.1|EV269992
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
EST: gi|10237871|gb|BE806759.1|BE806759
EST:     CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAG                         GTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG
genomic: CAACTATCTTGGGGCTGATCAACCCACCTTCACCCTTAACTTCTCCAAAGgtcacacata ... atgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttatgcacgagtatgtactcattgtttcacaaaatatcaaatgcatgcagGTTCTAGCCAAGTCATTGCTCAATACTACCAACTGATTCGCCTTGGTTTTGAG
                                 acaaaatatcaaat  TA-rich tract