1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgggtgaagcctcatgatagcttttcacacatcttagtgttattattaaaatttaatggctcattattggtgattttgttaattacttgattaatctagGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAGAACGGATATGGAGCAAATGTTACTGAATGGCCTGCACGTTTGCAAACCCCCCCTGATAGG
species | Glycine max |
transcript | GLYMA18G03890.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
attaaaatttaatggctcattattggtgattttgttaattacttgattaatctagGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAGAACGGATATGGAGCAAATGTTACTGAATGGCCTGCACGTTTGCAAACCCCCCCTGATAGG
gattaat putative branch site (score: 3)
attttgttaattactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgggtgaagcctcatgatagcttttcacacatcttagtgttattattaaaatttaatggctcattattggtgattttgttaattacttgattaatctagGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAGAACGGATATGGAGCAAATGTTACTGAATGGCCTGCACGTTTGCAAACCCCCCCTGATAGG
ttgggtg
- - - - - cctcatg
- - - - - - - - - - - - - cacacat
- - - - - - - - - - - - - - - - -cttagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attggtg