1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ggtatttcatgccattcaatgtaaaactgatgtttttcttcttatgttttgtttatattttgtttgattcaaaatttctatatgaaaattctgaattttatccatacaattgtgtaaccagtttctcctgttttttttaattcttcttacctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCCACAGA
species | Glycine max |
transcript | GLYMA18G03360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|207798891|gb|GD770942.1|GD770942
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGAEST: gi|208125210|gb|GD921010.1|GD921010
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGA
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|208210642|gb|GE011717.1|GE011717
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|208122353|gb|GD920818.1|GD920818
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|207716296|gb|GD697574.1|GD697574
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|193390906|gb|FK353690.1|FK353690
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCAEST: gi|8284769|gb|BE022328.1|BE022328
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCA
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATEST: gi|193359721|gb|FK324141.1|FK324141
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGAT
EST: GTTTGTGCATGTGCCATCAGAGATTGCTGCTACATGAAGTTGAGGAAATA GGAGTGGAACAEST: gi|208065097|gb|GD862117.1|GD862117
genomic: GTTTGTGCATGTGCCATCAGAGATTGCTGCT-CATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACA
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGEST: gi|207747114|gb|GD718335.1|GD718335
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAG
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|193357719|gb|FK320565.1|FK320565
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCCATTAGCACCCTEST: gi|207761835|gb|GD734136.1|GD734136
genomic: TTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAA-CCATTAGCACCCT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|193425604|gb|FK391691.1|FK391691
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: AGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTEST: gi|193324025|gb|FK291773.1|FK291773
genomic: AGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATATGAAGGATACAACCATTAGCACCCTTEST: gi|193708925|gb|FK644603.1|FK644603
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
EST: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATA GGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
genomic: TGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAggtatttcat ... cctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTT
tacaattgtgtaaccagtttctcctgttttttttaattcttcttacctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCCACAGA
ttcttac putative branch site (score: 2)
tttctcctgttttttt CT-rich tract
tgttttttttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatttcatgccattcaatgtaaaactgatgtttttcttcttatgttttgtttatattttgtttgattcaaaatttctatatgaaaattctgaattttatccatacaattgtgtaaccagtttctcctgttttttttaattcttcttacctttgtgcaGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCCACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG