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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaaccaacaaccttaattgttttttctctctggtggggtttctctcctttgaaattgtttcaactaaactttgtttaaaaaaccttgttttaaaaaaaattaatttgtagGTTGAAAATGTGACGCATTCGGCCCCAAATAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT

Basic information

species Glycine max
transcript GLYMA18G03280.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03280.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g00330.t01 (Vitis vinifera), 3'ss of exon 5
----------------gtaagcaaaaccaacaaccttaattgttttttctctctggtg----gggtttctctcctttgaaattgtttcaactaaactttgtttaaaaaaccttgttttaaaaaaaattaatttgtagGTTGAAAATGTGACGCATTCGGCCCCAAATAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT
                 |            ||  | | |   |  |   || ||||      |  |  || |||||| |  || | | | || |||        |   || |||  |        | |  |||  ||||||||||||||| |||  | | ||| | |||| ||||  |||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| ||
gtattcttcattttttctttctgggtttttcactccttacaatcatccttcactggataaacgaatcactttccttttatcttttgtaatctcaacggaaagccattgactttggat-ggtttttactgttttacagGTTGAAAATGTGAAGCACACAGGCCCTACTAAGCTGGTCCTGTATTTCACTGGGGCCACCAACATCCTCTACACTTTCGGCGGACACGCCGTCACTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324442|gb|FK015793.1|FK015793
EST:     CCACCTACACTGCATGGTATTTGACCATTGCAGCCCTTGTTCATGGCCAG                         GTTGAAAATGCGACGCATTCGGC
genomic: CCACCTACACTGCATGGTATTTGACCATTGCAGCCCTTGTTCATGGCCAGgtaagcaaaa ... taatttgtagGTTGAAAATGTGACGCATTCGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcaactaaactttgtttaaaaaaccttgttttaaaaaaaattaatttgtagGTTGAAAATGTGACGCATTCGGCCCCAAATAAGATGGTTTTGTATTTCACAGGCGCCACCAACATACTCTACACTTTCGGCGGGCACGCCGTCACAGT
         taaactttgtttaaaa  TA-rich tract