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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttttggcctttttggatgttagcatttttctatatcgaagcataatattctataaatcagcattgtttttcttatttcccattattttgtcagtgtcttaccgtttacatatttgattatttatttattttgccttatagTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTGGACATACCAGGTGTAG

Basic information

species Glycine max
transcript GLYMA18G02760.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02760.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 5
gtatagttttggcctttttggatgttagcatttttctatatcgaagcataatattctataaatcagcattgtttttcttatttcccattattttgtcagtgtcttaccgtttac-atatttgattatttatttattt-tgccttatagTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTGGACATACCAGGTGTAG
                                                ||   || |  | |  ||||     ||  ||| ||   | ||||       | |   || | | |    | ||  |   || || | || ||    |||| |||| |||||||||||| | |||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| || || || |
-----------------------------------------------gtatatttgttgagactagcaca--cttgattagtttttaatattgaaattttatgaaactgatcattgcactttctggcttcttcacttgtgttcaatagACTGCAAGGGAGAAAGCATTGGCTTCATTTACATCTCTTTCAAGTGGTATTCTTCTATGTACCGATGTTGCAGCTCGTGGACTTGACATTCCTGGCGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtcagtgtcttaccgtttacatatttgattatttatttattttgccttatagTCTGCCAGGGAGAAAGCACTAGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACGGATGTTGCAGCACGTGGACTGGACATACCAGGTGTAG
                                          ttttgcctt  CT-rich tract
                  tttacatatttgatta  TA-rich tract