1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggagaagatgagttaatatactagcagtttctcttgtggatcacattatgttgatcagcatcttccttcctttccctctctctttaatatcttaaggcaacaaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG
species | Glycine max |
transcript | GLYMA18G02430.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAG GGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGAEST: gi|254319399|gb|GR830639.1|GR830639
genomic: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGgtatggagaa ... aaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGA
EST: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAG GGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGAEST: gi|254318232|gb|GR832400.1|GR832400
genomic: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGgtatggagaa ... aaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGA
EST: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAG GGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGAEST: gi|209698357|gb|BW678075.1|BW678075
genomic: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGgtatggagaa ... aaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGA
EST: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAG GGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGA
genomic: GTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGgtatggagaa ... aaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGA
agcatcttccttcctttccctctctctttaatatcttaaggcaacaaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG
ctttaat putative branch site (score: 4)
tctttaatatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggagaagatgagttaatatactagcagtttctcttgtggatcacattatgttgatcagcatcttccttcctttccctctctctttaatatcttaaggcaacaaaactgcagGGAATTTATATAGGCGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATCAGTAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA