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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaccatgtgttttgccaatgatcattatgatcatgagaaagagttgtcattccctgagcatctcgtctctttctgcttttcatcttatttatttaacgtttattttatctcccagctaagcatatctatcttgtgtcagGTGTTTTTGATGTGTTAGCCTATACTGACAAAGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTGATTGCAAATCCGCAAATGGTGAA

Basic information

species Glycine max
transcript GLYMA18G01350.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01350.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 5
gtaaggaccatgtgttttgccaatgatcattatgatcatgagaaagagttgtcattccctgagcatctcgtctctttctgcttttcatcttatttatttaacgtttattttatctcccagctaagcatatctatcttgtgtcagGTGTTTTTGATGTGTTAGCCTATACTGACAAAGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTGATTGCAAATCCGCAAATGGTGAA
                                             |   || ||| ||   | |    |   | |||| |  | |    |  |   ||| ||  | ||   |||||| |  |  |    | | || |   |||||||| |||||||||||||| || |||||||  ||||| |||||||||||||| ||| |||||||||| || ||||||||||| ||||| || ||||||||
---------------------------------------------gtaatgccatgccaccaac--tacacttttttccggatgttgggtggtgatttttac--tgatggaatctcc-acttgtgatggtttgtcct---tcagGTGTGTTTGATGTGTTAGCATACACTGACACGGATGTTGCAGTTCCATTCACCTGGATTGAGAGTGACCCCAAACTGATTGCCAATCCACAGATGGTGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttatttaacgtttattttatctcccagctaagcatatctatcttgtgtcagGTGTTTTTGATGTGTTAGCCTATACTGACAAAGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTGATTGCAAATCCGCAAATGGTGAA
      atttaac  putative branch site (score: 3)
                                        tctatctt  putative PPT
     tatttaacgtttattt  TA-rich tract