Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG

Basic information

species Glycine max
transcript GLYMA18G01110.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os09g08430.1 (Oryza sativa), 3'ss of exon 5
gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtctttt-ttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
||| ||   |   |   ||  | | |    |||  | || | |  | |     || | |   |||    |  |  ||||||||||||||||| || || |||||||||||||| ||  | || ||||||||||| || |||||||| |||
gtaagtttgtcaatacctttttgt-atgctctttgtagagttcggtgatgc-tttgtctcatgagcaaatgatactttgcagCTTACATGTCCTCCCCGTGCCACATTGAGCTTATCCTGTCAGAGAAGGAAGAACCAGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G702426_T01 (Zea mays), 3'ss of exon 5
gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
||||||  |      || | || |||     ||  ||    ||| ||   |  | || || |   |||   | || ||||||||||||||| || || |||||||||||||||||  | || |||||||||||||| |||||||| |||
gtatgtatcgaaggatggt-ctttca-----ttcttgcgacactgttgaatggt-atatttaa--tgttgctgttctgcagCTTACATGTCCTCCCCTTGCCACATTGAGCTGATTCTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G148744_T02 (Zea mays), 3'ss of exon 5
gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
||| ||  |   ||   |      || | | ||| || |  | |      || | || |    | | |     || |||||| |||||||| || || ||||||||||||||||| || || |||||||||||||| |||||||| |||
gtacgtatcgtattgaatgatggccattca-ttattgtaacagtgcagaatagt-atatatttaattttgccgttctgcagCCTACATGTCCTCACCTTGCCACATTGAGCTGATCTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G126594_T02 (Zea mays), 3'ss of exon 5
------gtatgtcgctggttttgttgctatcactgacttaatggattactattactt----actta-tgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
       ||| |  ||    |||  | | |  || |    ||| | |  | ||  ||     ||||   ||  |  || ||   |  | ||||||||||||| || ||||||||||| ||||| || || || ||||||||||| || |||||||| |||
gtaagtctatctaactaaagttgaagtt-ttgct-atgcgatgaactgttcttcatttggagcttaacattctgtttgcctacctggtccagCTTACATGTCCTCCCCATGCCACATAGAGCTCATCTTGTCGGAGAAGGAAGAACCAGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G119169_T04 (Zea mays), 3'ss of exon 4
gtatgtcg--ctggttttgttgctatcactgac-ttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
||| |||   |||   |||  | |  |  ||   | ||  | ||||||||     |||| | |     |  ||   |  ||||||||||||||| || || |||||||| || || || || || |||||||||||||| |||||||| |||
gtaagtcagtctgaagttgaagttcgctatgctatgaacaggttactatttgcagcttaagatcc---tacctacctggtgcagCTTACATGTCCTCCCCGTGCCACATCGAACTCATCTTGTCAGAGAAGGAAGAGCCCGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G67430.2 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtcgctggttttgttgctatcactgac-ttaatggattactattacttact-tatg-ttgagagtgtctttttt--ttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
             |||||    |||||| || || || | ||  | | |   | | ||||  | ||  ||||||| ||  ||||||||||||||||    ||||||||||||||| |||| || || |||||||||||||| || || || |||
-------------tttgtaa--atcacttacattgatagctttttgtaatccattgtatgactcagtttgtctttcttggttgcagcttacatgtccaacccatgccacattgagTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G67430.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtcgctggttttgttgctatcactgac-ttaatggattactattacttact-tatg-ttgagagtgtctttttt--ttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
||| ||    | ||||||    |||||| || || || | ||  | | |   | | ||||  | ||  ||||||| ||  ||||||||||||||||    ||||||||||||||| |||| || || |||||||||||||| || || || |||
gtaagtttgagattttgtaa--atcacttacattgatagctttttgtaatccattgtatgactcagtttgtctttcttggttgcagCTTACATGTCCAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G27400.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgtcgctggttttgttgctatcactgacttaatggattactatt-acttac-ttatgttga-----gagtg---tcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
|||||||     || | || | |    |     || |  |   | || | | || || || |||     || |    ||| | || ||||||||||||||||   ||||||||||||||| |||| || || ||||| |||||||| |||||||| |||
gtatgtcttcttttctatt-cgactgtttttacaacgtttgtttcttcattcacattgtgctgactctcgatttaattctatcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S97_78V6.3 (Physcomitrella patens), 3'ss of exon 3
-----------------------gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG--------------------------------
                         ||||   | ||||| |    |      ||    ||  | ||||  | | |  ||  |||    ||   |   ||||||||||||||||| ||||| |||||||||||||| ||  | ||||||||||| | ||| ||   ||| | |                                
gtgctatttcccgattattttataaatgtt-ttagttttatgttcagtgggaacccc-tgtgtcactaacaatga--tacattgcctctgatgtcgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGCGCCAGTTGCGAAAGCGGTAGAGGTTTCTGAACCCAAGACGCGCAGGAA

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S22_76V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------gtatgtcgctggttttg---ttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttt-tgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
                                   | ||    ||| |    |  |||  ||   | | |  ||    | |     ||||||| | |   | | |||| |  ||||||||||||||| ||||| |||||||||||  ||||  | ||||||||||| | ||| ||||| || |||
gtaagtcgctcctttgtcccacttttgtattgtcgtttcttcagttctcgattctctaggacgatcgtgaaagacgtatctgtgaaacttatgctaattctttattttgtgatgcagCTTACATGTCCTCTCCTTGCCACATTGAATTGATTCTTTCTGAGAAGGAGGCGCCAGTGAAAAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S38_376V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------gtatgtcgctggttttgttgctatcactgactt-aatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
                                         ||||   |  || |  |   |  |||  || | |||    |  | | ||  | | ||| ||        |   | |||||||||||||||| ||||| |||||||||||||||||  | ||||||||||||| ||| |||||||| |||
gtaagtggctactccattcctactgttgtgttgtaattcgttatggaacctgtgtaatgtttggcacgtacgtgaatcccgtgttgtcacaaattgatggtgttgcccattgggtgttgcagCTTACATGTCCTCTCCTTGCCACATTGAGCTGATCCTTTCTGAGAAGGAAGCGCCAGTGAAGAAAGAG

upper sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S364_56V6.2 (Physcomitrella patens), 3'ss of exon 3
------------gtatgtcgctggttttgttgctatcactgactt---aatg-gattactattacttac--ttatg-ttgagagtgt-cttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
             |  | |  |    |||  | || || || | |   |||| || | |   || | |   |||    | | |   | | |  || ||||||||||||||| ||||| ||||||||||||||  |  | || |||||||| |  || || ||||| |||
tgcactcttgaactgagcccttacccttga-gttaacaatggcctctgaatgtgacttcacctaatcataattacaactaataacttacgtcgttatgcagCTTACATGTCCTCTCCTTGCCACATTGAGCTCGTCCTCTCAGAGAAGGAGGCTCCAGTAAAGAAAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011275|gb|BG726206.1|BG726206
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|305377802|gb|HO652033.1|HO652033
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192318954|gb|FK009034.1|FK009034
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|151411461|gb|EV281272.1|EV281272
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|20814017|gb|BQ298495.1|BQ298495
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|15815139|gb|BI787414.1|BI787414
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|120529639|gb|EH257773.1|EH257773
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192330707|gb|FK022320.1|FK022320
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192297172|gb|FG988268.1|FG988268
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|22932992|gb|BU550131.1|BU550131
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192318955|gb|FK009035.1|FK009035
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|6072248|gb|AW101635.1|AW101635
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|14126219|gb|BG790657.1|BG790657
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|37994714|gb|CF806336.1|CF806336
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|21888291|gb|BQ741504.1|BQ741504
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|209706839|gb|BW653131.1|BW653131
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|16282501|gb|BI945051.1|BI945051
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|151394964|gb|EV264835.1|EV264835
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|17021507|gb|BM092541.1|BM092541
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATC
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATC
EST: gi|298172778|gb|HO020332.1|HO020332
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATTTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|209706840|gb|BW653132.1|BW653132
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|22540234|gb|BU090077.1|BU090077
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTA
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTA
EST: gi|151400770|gb|EV270584.1|EV270584
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAACTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|18726863|gb|BM523799.1|BM523799
EST:     GCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: GCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|13788209|gb|BG650801.1|BG650801
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGAT
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGAT
EST: gi|192298114|gb|FG991394.1|FG991394
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|254320686|gb|GR827135.1|GR827135
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|9258634|gb|BE346781.1|BE346781
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATCGAGCTGATATTATCTGAGATGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192322932|gb|FK016663.1|FK016663
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|22525186|gb|BU083997.1|BU083997
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|192330708|gb|FK022321.1|FK022321
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATTTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|21256455|gb|BQ453343.1|BQ453343
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|13181069|gb|BG352409.1|BG352409
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATT
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATT
EST: gi|6566102|gb|AW233862.1|AW233862
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|21887436|gb|BQ740649.1|BQ740649
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAG
EST: gi|37994771|gb|CF806360.1|CF806360
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGA
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGA
EST: gi|6725501|gb|AW309900.1|AW309900
EST:     AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACC                         CTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGA
genomic: AGCACAGAAGCAAAGACGCCGCACCTACAGAGCTCATGGAAGAATCAACCgtatgtcgct ... ttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG
                    tacttac  putative branch site (score: 1)
                                       tgtcttttttttgc  putative PPT
            attactattactta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtcgctggttttgttgctatcactgacttaatggattactattacttacttatgttgagagtgtcttttttttgcagCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCGGTGAAGAAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG