1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaataatcgaagctgcttgactacacgacttgttcttttgggacagttattgacgtctgcaaatggataacctttatactaattagagattcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTG
species | Glycine max |
transcript | GLYMA17G38220.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGTCAGGG-GTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGA-TATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|209714193|gb|BW679522.1|BW679522
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|120492058|gb|EH220225.1|EH220225
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|209716259|gb|BW657562.1|BW657562
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|120491987|gb|EH220154.1|EH220154
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|31463377|gb|CD405405.1|CD405405
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|193615748|gb|FK561961.1|FK561961
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGACGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|24136537|gb|BU927047.1|BU927047
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|31462175|gb|CD404203.1|CD404203
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|51337747|gb|CO981613.1|CO981613
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|27425968|gb|CA937488.1|CA937488
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|209703880|gb|BW667921.1|BW667921
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|213607012|gb|DB980732.1|DB980732
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTACTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|7283675|gb|AW596279.1|AW596279
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|31458047|gb|CD400075.1|CD400075
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|151404020|gb|EV273830.1|EV273830
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|120533754|gb|EH261887.1|EH261887
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|31466890|gb|CD408918.1|CD408918
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTEST: gi|13481342|gb|BG510685.1|BG510685
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
EST: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATG GTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
genomic: CTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGgtaatgcttg ... tcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTT
gttattgacgtctgcaaatggataacctttatactaattagagattcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTG
tactaat putative branch site (score: 1)
ttctt putative PPT
tttatactaattaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaataatcgaagctgcttgactacacgacttgttcttttgggacagttattgacgtctgcaaatggataacctttatactaattagagattcttaaacagGTTGGACCTGAATATGCTAGATATTGTGGGATCGAGGCATTGGAGCCTCTTGGAATATATCTGCCTGGTGATATAAATTATCCTGGAGGAGCTTTGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT