1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctctacttctgacaattgtgtcctgggtgtaaatttatttgagctaaattttagggcatagcaaacctcaaataacaaatctatttttgtgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTTTCAGCAGTCATATCAATTTGGAGATTTCGATGACTTACTCATGCCCTT
species | Glycine max |
transcript | GLYMA17G37730.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|31474478|gb|CD416506.1|CD416506
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGANACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|120494113|gb|EH222280.1|EH222280
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|151412034|gb|EV281845.1|EV281845
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|16345364|gb|BI970959.1|BI970959
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|298170230|gb|HO018854.1|HO018854
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAAEST: gi|38193189|gb|CF922395.1|CF922395
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAA
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAGTGAAAAATTACTTEST: gi|21602650|gb|BQ612981.1|BQ612981
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|8283304|gb|BE020865.1|BE020865
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|5510121|gb|AI856505.1|AI856505
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: TTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|7795478|gb|AW780875.1|AW780875
genomic: TTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAEST: gi|15200385|gb|BI424322.1|BI424322
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGA
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|31312367|gb|CD397570.1|CD397570
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|17519104|gb|BM188146.1|BM188146
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|20448913|gb|BQ253037.1|BQ253037
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|17153474|gb|BM143407.1|BM143407
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAEST: gi|120494291|gb|EH222458.1|EH222458
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGA
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|192322713|gb|FK014404.1|FK014404
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGGAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|13478215|gb|BG507779.1|BG507779
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|120494235|gb|EH222402.1|EH222402
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|151412841|gb|EV282653.1|EV282653
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|209699340|gb|BW664059.1|BW664059
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|6916010|gb|AW397540.1|AW397540
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: TTCTAGCGGGTGAACTGCAAGATACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|192297663|gb|FG989582.1|FG989582
genomic: TTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|26269345|gb|CA820408.1|CA820408
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|298169760|gb|HO021120.1|HO021120
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|298187150|gb|HO034299.1|HO034299
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTEST: gi|31462386|gb|CD404414.1|CD404414
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
EST: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGG CTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
genomic: ACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattct ... tgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTT
taaattttagggcatagcaaacctcaaataacaaatctatttttgtgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTTTCAGCAGTCATATCAATTTGGAGATTTCGATGACTTACTCATGCCCTT
aaataac putative branch site (score: 2)
tttttgt putative PPT
tcaaataacaaatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctacttctgacaattgtgtcctgggtgtaaatttatttgagctaaattttagggcatagcaaacctcaaataacaaatctatttttgtgcttgcaggCTATCATTGAGAGAATGGGGGAACTTGAAAAACTAGAATGAAAAATTACTTTTCAGCAGTCATATCAATTTGGAGATTTCGATGACTTACTCATGCCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - -ttctgac
- - - - - - - - -tgtgtcc
- - - - - - - - - - - - tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcaaa