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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtcagaattgtttcatttctgaattccattgtgttttgagattttggttaatctcaaatgtattgtaccttacccttcatgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA

Basic information

species Glycine max
transcript GLYMA17G37220.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37220.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 5
----------ggtcagaattgtttcatttctgaattccattgtgttttgaga-ttttggttaatctcaaatgtattgtaccttacccttcatgttggt--gtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA-
               |   |||| ||||| | |  |  | | || | ||||| ||||     |  |  ||| |    | ||||    ||     ||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| 
gtcagacttacacttggtgtgttgcattt-taagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279081|gb|BI943248.1|BI943248
EST:     ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAA                         GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
genomic: ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
EST: gi|192308350|gb|FK001336.1|FK001336
EST:     ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAA                         GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
genomic: ACATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCTTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTT
EST: gi|16281445|gb|BI944491.1|BI944491
EST:     CATTGGTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTCCTTGAA                         GGGTGTTTCA-GTGCAATTATTGATAAA
genomic: CATTGTTAGCTAGGGCAATTGCCAGTAACATAGATGCTAACTTC-TTGAAggtcagaatt ... tgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgagattttggttaatctcaaatgtattgtaccttacccttcatgttggtgtaGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCA
                                accttac  putative branch site (score: 3)
                                      cccttcat  CT-rich tract
                     aaatgtatt  TA-rich tract