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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgactttagtcataattattgtggtagtttttagttcttctaggtttctggacttattgttctggtatctgttctaacctataaatgattctgtgcagACATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAA

Basic information

species Glycine max
transcript GLYMA17G37150.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G171354_T03 (Zea mays), 3'ss of exon 6
gtatgtgactttagtcataattattgtggtagtttttagttcttctaggtttctggacttattgttctggtatctgttctaacctataaatgattctgtgcagACATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAA
                   || |   |  |  ||||||     |||   ||| | |  || ||| | ||| || | ||        |   ||  |||   |||||  |||  | |||||||||  ||||||||||||| |||||   ||| || |||||||| ||||| || ||||||||||||||||||||  | |||||| 
-----------------gtatgagcctcattttttttacactctct---tttgttgtttttttgct-tggaatatattgggttaatttgttgcatctc--cagACTCTATACCAAATGTTTATTGTCAATGCTGGTCCGGGTTTCCGGCTACTATGGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATAC

upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 4
gtatgtgactttagtcataattattgtggtagtttttagttcttctaggtttctggacttattgttctggtatctgttctaacctataaatgattctgtgcagACATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAA
                     |||||| |  | |   | |  |  |   |  |   || | ||  |  |   | | |  |||  | | |       |||||||||| |    || |||||||| |||||||| ||| | ||||||||||| ||||||  ||| |||||||| ||||||||||| || |||   || || ||| 
--------------------gtattgtcg--gctgccaatgatatttattagcaaaacctgtttctgagcattgtttgataatatgtgatatgacatgtgcagACACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATAC

upper sequence: GLYMA17G37150.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------------gtatgtgactttagtcataattattgtggtagtttttagttcttctaggtttctggactt-attgttctggta-tctgttctaacctataaatgatt-ctgtgcagACATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAA
                                                   |  ||||  |  |  | ||||||  |    |||   |||         ||||| |||| | |||| |  || ||  || |||| | ||||       | |||||||| | || | ||||||||| || ||||||||||| ||||||| |||||| |||||||| |||||  | ||||||||||| ||||| ||||| |||||  
gtatggagtttcaatgcttaacacccttatatgagtttatgataattgcacagttgaccctcatgttgattattagg---atttggggttaaatcccaattctgcacttgaatgttgtactactcccttataacatttaaacatcaattctgcagACACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctggacttattgttctggtatctgttctaacctataaatgattctgtgcagACATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAA
                            ttctaac  putative branch site (score: 1)
                                    tataaatgatt  TA-rich tract