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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatttttgtgcttgctttgttctgttaagttgttccatttaacagatgtggtttgtatgcaatagtgattttccaaatacgaatgttgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCT

Basic information

species Glycine max
transcript GLYMA17G34020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34020.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G146951_T01 (Zea mays), 3'ss of exon 5
gtcagtatttttgtgcttgctttgttctgttaagttgttcca-tttaacagatgtggt-ttgtatgcaatagtgattttccaaatacgaatgttgctg--tgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCT
            ||   |  ||||   ||  || | | |  | || ||   |     | |  ||     || |   |  ||||| |   |||   |    ||||| ||||| ||||||| ||||||| | ||| |||| ||||  |||||  ||||||| ||||||||||||||| |||  |   ||      ||| |   ||||
------------gtaaattgtttggaatg--aaatagctgtagttaaatgtagacaatatcctacttgttaatatctaaccaaagaactatgacacatactgcagCGTTAAGCATGAATATGAAGGGCAATGGAATGATAAGAAGACCCGCCTGACAACGTGTGACCCTCATGCTCAACGTATCATTACTTCGTCCGAGTCTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatgtggtttgtatgcaatagtgattttccaaatacgaatgttgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTGACAACCTGTGACCCTCATGCTAAACACACAGTTGTCAATTCCAACAGTCCT
 atttaac  putative branch site (score: 3)
          tttgtat  TA-rich tract