1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatccttttttgggtttgtatatttatgagtgaaaatctggaactactgggtctctattatttaaatttattattgagtgtggtgctgtgtatattgtgttttaaccttaatcctcctagAAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGGAGAGAG
species | Glycine max |
transcript | GLYMA17G31990.1 |
intron # | 5 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TCGAGGAAAGAACCCATTGATAAAGTTCAAGGAGAAGCAGAATCTTCCTT AAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAAEST: gi|193500266|gb|FK465295.1|FK465295
genomic: TCGAGAAAAGAACCCATTGATAAAGTTCAAGGAGAAGCAGAATCTTCCTTgtatcctttt ... atcctcctagAAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAA
EST: GAAGCAGAATCTTCCTT AAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAA
genomic: GAAGCAGAATCTTCCTTgtatcctttt ... atcctcctagAAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAA
atttattattgagtgtggtgctgtgtatattgtgttttaaccttaatcctcctagAAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGGAGAGAG
aaccttaat putative branch site
tcctcct putative PPT
tatattgtgttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttttttgggtttgtatatttatgagtgaaaatctggaactactgggtctctattatttaaatttattattgagtgtggtgctgtgtatattgtgttttaaccttaatcctcctagAAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA