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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgacaaaattctgttattttgtttaaaatgttttagaatattattaccatagttacactttcttcattgtagcaaacagGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTATGGCTGCATCTTCCTCCAATGTCTATTCCTTTACATTCTTAGCAATTTGG

Basic information

species Glycine max
transcript GLYMA17G31400.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208286507|gb|GE086537.1|GE086537
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         GTTGCCGGGGGTGACTTATTATGTGAA
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacagGTTGCCGGGGGTGACTTATTATGTGAA
EST: gi|207798995|gb|GD770990.1|GD770990
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         GTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTAT
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacagGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTAT
EST: gi|193397520|gb|FK361538.1|FK361538
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         GTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTAT
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacagGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTAT
EST: gi|193425833|gb|FK385724.1|FK385724
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         GTTGCCGGGGGTGACTCATTATGTGAACAATCAACGCGAAATTGAAGTTAT
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacagGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTAT
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-
EST: gi|51335229|gb|CO979095.1|CO979095
EST:     TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAG                         C
genomic: TTAACAAGCAGAAGATTGTGTAATCTGTTGCCGACATCTTGTCTGTAAAGgtatgttgac ... tagcaaacag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgttttagaatattattaccatagttacactttcttcattgtagcaaacagGTTGCCGGGGGTGACTTATTATGTGAACAATCAACGCGAAATTGAAGTTATGGCTGCATCTTCCTCCAATGTCTATTCCTTTACATTCTTAGCAATTTGG
      ttttagaatattatta  TA-rich tract