1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgagatctcaagtaatgattgctttcaaaattaagattggttttcctcatgtgcaataggtctagtggattaatatatttgctatggtggccttttagGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCTTAGAAAGAAGAGCTCCATATGTTCCTCCTCAATTTGACACAGTTTGAAG
species | Glycine max |
transcript | GLYMA17G30770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAG GTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCTEST: gi|213613529|gb|DB963259.1|DB963259
genomic: GGAGGCTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAGgtatcttaca ... ggccttttagGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCT
EST: GGAGGCTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAG GTTGCTGTTCAAAGGATTCCTC
genomic: GGAGGCTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAGgtatcttaca ... ggccttttagGTTGCTGTTCAAAGGATTCCTC
tcctcatgtgcaataggtctagtggattaatatatttgctatggtggccttttagGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCTTAGAAAGAAGAGCTCCATATGTTCCTCCTCAATTTGACACAGTTTGAAG
gattaat putative branch site (score: 3)
cctttt putative PPT
attaatatatttgcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgagatctcaagtaatgattgctttcaaaattaagattggttttcctcatgtgcaataggtctagtggattaatatatttgctatggtggccttttagGTTGCTGTTCAAAGGATTCCTCAGTGGAAGAAGTAGTAAACCATGGATGCTTAGAAAGAAGAGCTCCATATGTTCCTCCTCAATTTGACACAGTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG