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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtacatctagtactgcattattcataatatataatactaatttttgctgtgcaaaaaaaaaatgattaaattaggtttctctttgattaattcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGGGAACAACTACAAGATTGTGGCTG

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGGCTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTATGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAAAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|151396592|gb|EV266469.1|EV266469
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|207845484|gb|GD814073.1|GD814073
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTATGTCTAGCAAGCTAACACCGTTGCAGTT
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTT
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTATGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGNTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAG                         GTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG
genomic: TGATACATATGTTAACACAACAACCTCCATTCCAAGGACTAGgtactgttag ... attcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtgcaaaaaaaaaatgattaaattaggtttctctttgattaattcttacagGTACGTCTAGCAAGCTAACACCGTTGCAGTTGGAAAGCCTGCTGACAGAGGGAACAACTACAAGATTGTGGCTG
                                        gattaat  putative branch site (score: 3)
                                              ttcttac  CT-rich tract
        aaaaaaaaaatgatta  TA-rich tract